MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:119.8 nTPM
GTEx:11.6 nTPM
FANTOM5:2.3 Scaled Tags Per Million
Pig:46.5 nTPM
Mouse:164.7 nTPM
Allen mouse:12.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 119.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.0
2019 Male, age 18, unknown 89.3
2828 Female, age 72, unknown 80.1
2586 Male, age 75, left hemisphere 77.3
1827 Male, age 72, unknown 70.4
2219 Male, age 76, both hemispheres 70.0
1833 Male, age 53, unknown 65.9
2411 Female, age 72, unknown 50.3
1830 Male, age 51, unknown 46.5
2666 Male, age 74, left hemisphere 45.4
1870 Female, age 42, unknown 45.1
Dorsal raphe nucleus
nTPM: 45.1
1828 Male, age 53, unknown 55.7
2298 Female, age 72, unknown 55.6
2016 Female, age 72, unknown 40.1
2750 Male, age 76, both hemispheres 39.8
2047 Male, age 72, unknown 34.4
Inferior colliculus
nTPM: 91.5
2097 Female, age 72, unknown 153.3
1890 Male, age 53, unknown 71.6
2849 Male, age 72, unknown 70.6
1848 Female, age 42, unknown 70.4
Median raphe nucleus
nTPM: 42.0
2220 Male, age 76, midline 42.0
Periaquaductal grey, anterior
nTPM: 63.5
2502 Female, age 75, unknown 103.7
1795 Male, age 51, unknown 66.1
1947 Male, age 18, unknown 20.7
Periaquaductal grey, dorsal
nTPM: 66.8
1840 Male, age 53, unknown 76.2
2464 Female, age 72, unknown 68.8
1831 Male, age 72, unknown 67.6
2850 Male, age 76, both hemispheres 54.7
Periaquaductal grey, lateral
nTPM: 47.4
2053 Male, age 18, unknown 56.4
2140 Male, age 76, both hemispheres 43.8
2272 Male, age 74, both hemispheres 41.9
Pretectal area
nTPM: 119.8
1816 Male, age 51, unknown 218.8
1944 Female, age 72, unknown 199.9
1815 Male, age 53, unknown 187.7
1817 Female, age 42, unknown 158.9
2007 Male, age 72, unknown 158.8
2667 Female, age 75, unknown 99.8
2273 Male, age 74, both hemispheres 70.0
2407 Male, age 75, both hemispheres 68.6
2224 Female, age 72, unknown 65.1
2316 Male, age 76, right hemisphere 49.1
2825 Male, age 18, unknown 41.4
Red nucleus
nTPM: 27.3
2785 Male, age 18, unknown 96.4
2584 Male, age 75, left hemisphere 57.7
2588 Male, age 74, left hemisphere 26.2
2725 Female, age 75, unknown 21.3
1821 Female, age 72, unknown 20.9
2769 Male, age 72, unknown 19.4
2227 Male, age 72, unknown 19.2
2503 Female, age 72, unknown 15.8
2823 Male, age 76, right hemisphere 15.6
1865 Male, age 51, unknown 13.4
1904 Male, age 53, unknown 12.3
1954 Female, age 42, unknown 9.8
Substantia nigra
nTPM: 49.4
1889 Female, age 72, unknown 116.5
2241 Male, age 72, unknown 55.2
1916 Female, age 42, unknown 55.0
1851 Male, age 51, unknown 54.6
2665 Male, age 74, both hemispheres 54.3
2409 Female, age 72, unknown 46.4
2583 Male, age 75, right hemisphere 39.8
2699 Male, age 18, unknown 28.0
2590 Female, age 75, unknown 22.9
1941 Male, age 53, unknown 20.9
Superior colliculus
nTPM: 92.8
2087 Female, age 72, unknown 168.4
2261 Male, age 18, unknown 112.1
1913 Female, age 42, unknown 108.1
1796 Male, age 53, unknown 100.4
2668 Female, age 75, unknown 88.6
1895 Male, age 76, right hemisphere 83.8
2664 Male, age 75, both hemispheres 77.4
1995 Male, age 72, unknown 77.0
2587 Male, age 74, left hemisphere 64.1
1839 Male, age 51, unknown 48.7
Ventral tegmental area
nTPM: 50.1
2021 Male, age 53, unknown 65.3
1942 Male, age 51, unknown 55.9
1915 Female, age 42, unknown 54.5
2218 Male, age 76, both hemispheres 50.9
2410 Female, age 72, unknown 38.3
2223 Female, age 72, unknown 35.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 139

Max nTPM: 44.6
Min nTPM: 0.9
Std nTPM: 8.3
Median nTPM: 9.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 44.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 41.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 40.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 29.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 28.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 28.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 27.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 26.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 26.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 26.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 26.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.3
FF:10158-103A5 76 years, female 2.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 46.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.6
Samples: 4

Max nTPM: 64.6
Min nTPM: 9.5
Sample A Female 58.4
Sample B Female 29.7
Sample C Male 64.6
Sample D Male 9.5
Midbrain
nTPM: 40.5
Samples: 4

Max nTPM: 64.0
Min nTPM: 8.7
Sample A Female 8.7
Sample B Female 32.2
Sample C Male 57.1
Sample D Male 64.0
Periaqueductal gray
nTPM: 32.5
Samples: 3

Max nTPM: 42.0
Min nTPM: 26.4
Sample B Female 29.0
Sample C Male 42.0
Sample D Male 26.4
Superior colliculi
nTPM: 46.5
Samples: 4

Max nTPM: 104.9
Min nTPM: 9.5
Sample A Female 32.5
Sample B Female 9.5
Sample C Male 39.2
Sample D Male 104.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 164.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 164.8
Samples: 4

Max nTPM: 169.7
Min nTPM: 157.9
Sample A Male 157.9
Sample B Male 162.7
Sample C Female 169.7
Sample D Female 168.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.5
68845556 Antisense, RP_050224_02_A07, Mouse strain C57BL/6J (56 days, male) 12.9
71587899 Antisense, RP_050725_03_G03, Mouse strain C57BL/6J (56 days, male) 12.0

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