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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
471.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 91.9
1984
Male, age 76, both hemispheres
141.2
2188
Female, age 91, both hemispheres
107.7
2301
Female, age 85, both hemispheres
79.8
2090
Male, age 80, both hemispheres
39.1
Dorsal cochlear nucleus nTPM: 37.5
2187
Female, age 91, both hemispheres
67.5
2058
Male, age 76, both hemispheres
47.4
2370
Male, age 61, both hemispheres
33.3
2802
Male, age 74, right hemisphere
19.8
2378
Male, age 80, both hemispheres
19.4
Dorsal tegmental nucleus nTPM: 58.5
2358
Male, age 61, both hemispheres
85.0
2083
Male, age 80, both hemispheres
60.4
1936
Male, age 76, left hemisphere
55.4
2326
Male, age 74, both hemispheres
33.1
Dorsolateral tegmental area nTPM: 49.6
2141
Male, age 76, both hemispheres
70.1
2654
Male, age 80, both hemispheres
66.4
2360
Male, age 74, both hemispheres
51.0
2751
Female, age 85, both hemispheres
40.2
2337
Male, age 61, both hemispheres
20.6
Kolliker-Fuse nucleus nTPM: 69.8
2793
Female, age 91, left hemisphere
109.8
2315
Male, age 76, right hemisphere
51.6
2163
Male, age 80, both hemispheres
47.8
Lateral lemniscal nuclei nTPM: 141.5
2169
Male, age 76, both hemispheres
218.1
2453
Male, age 74, right hemisphere
171.5
2746
Female, age 85, left hemisphere
118.0
2320
Female, age 91, left hemisphere
108.6
2036
Male, age 80, both hemispheres
91.2
Lateral parabrachial nucleus nTPM: 89.9
2139
Female, age 85, right hemisphere
180.1
2013
Male, age 80, both hemispheres
74.9
2790
Male, age 61, both hemispheres
70.9
2792
Male, age 76, both hemispheres
33.9
Lateral vestibular nucleus nTPM: 40.4
2184
Male, age 76, both hemispheres
45.9
2311
Male, age 80, both hemispheres
34.9
Locus coeruleus nTPM: 471.1
2720
Male, age 74, both hemispheres
976.9
2123
Female, age 91, both hemispheres
712.6
2788
Male, age 74, unknown
374.9
1980
Male, age 76, both hemispheres
364.2
2014
Male, age 55, unknown
308.5
2162
Male, age 80, both hemispheres
295.0
2317
Female, age 72, unknown
266.0
Medial parabrachial nucleus nTPM: 66.3
2854
Male, age 80, both hemispheres
126.8
2156
Male, age 61, both hemispheres
65.9
2786
Male, age 76, both hemispheres
49.7
2463
Female, age 85, right hemisphere
47.8
2170
Female, age 91, both hemispheres
41.1
Medial periolivary nuclei nTPM: 135.6
2171
Female, age 85, both hemispheres
225.6
2063
Male, age 76, both hemispheres
183.7
2458
Female, age 91, both hemispheres
105.3
2791
Male, age 74, right hemisphere
85.1
2081
Male, age 80, both hemispheres
78.3
Motor facial nucleus nTPM: 158.1
2327
Male, age 80, both hemispheres
234.2
2697
Female, age 85, both hemispheres
228.3
2062
Male, age 76, both hemispheres
186.9
2365
Male, age 74, right hemisphere
150.3
2795
Female, age 91, both hemispheres
87.7
2126
Male, age 61, both hemispheres
61.1
Motor trigeminal nucleus nTPM: 82.8
2079
Male, age 80, both hemispheres
161.8
2321
Female, age 91, both hemispheres
86.7
2560
Male, age 74, both hemispheres
61.7
2335
Male, age 61, both hemispheres
61.1
2309
Male, age 76, both hemispheres
42.5
Nuclei of the trapezoid body nTPM: 195.8
2159
Male, age 61, both hemispheres
327.6
2735
Female, age 85, both hemispheres
206.9
1983
Male, age 76, both hemispheres
175.2
2166
Male, age 80, both hemispheres
168.0
2368
Female, age 91, both hemispheres
101.3
Nucleus raphe magnus nTPM: 223.1
2160
Male, age 61, both hemispheres
298.0
2172
Female, age 85, both hemispheres
293.0
2455
Male, age 74, both hemispheres
279.9
2328
Male, age 80, both hemispheres
203.9
2459
Female, age 91, both hemispheres
141.8
2051
Male, age 76, both hemispheres
121.9
Paramedian reticular nucleus nTPM: 100.4
2050
Female, age 85, both hemispheres
194.8
2313
Male, age 61, both hemispheres
113.4
2052
Male, age 76, both hemispheres
47.6
2057
Male, age 80, both hemispheres
45.9
Pedunculopontine tegmental nucleus nTPM: 119.5
2334
Male, age 80, both hemispheres
212.6
2338
Male, age 61, both hemispheres
88.6
1921
Female, age 85, both hemispheres
57.4
Pontine nuclei nTPM: 177.8
1863
Male, age 55, unknown
258.1
2787
Female, age 85, both hemispheres
244.3
2109
Female, age 72, unknown
229.6
2727
Male, age 61, right hemisphere
201.0
2454
Male, age 74, left hemisphere
168.3
1968
Male, age 76, left hemisphere
154.8
2115
Male, age 80, left hemisphere
97.1
2319
Female, age 91, both hemispheres
69.0
Pontine raphe nucleus nTPM: 126.0
2122
Female, age 85, midline
163.9
2853
Male, age 76, midline
88.1
Posteroventral cochlear nucleus nTPM: 46.2
2070
Male, age 76, both hemispheres
95.0
2752
Female, age 85, both hemispheres
71.5
2371
Male, age 61, both hemispheres
30.9
2341
Male, age 80, both hemispheres
29.3
2135
Female, age 91, both hemispheres
4.5
Principal sensory trigeminal nucleus nTPM: 144.9
2158
Male, age 61, both hemispheres
273.6
2008
Male, age 80, left hemisphere
152.7
2367
Female, age 91, left hemisphere
112.1
2324
Male, age 76, both hemispheres
41.3
Reticular pontine nucleus, caudal nTPM: 132.0
2332
Male, age 80, right hemisphere
248.6
2092
Male, age 76, both hemispheres
133.1
2457
Female, age 91, both hemispheres
123.6
2559
Male, age 74, both hemispheres
22.5
Reticular pontine nucleus, oral nTPM: 101.8
2361
Male, age 74, both hemispheres
183.8
2012
Female, age 85, both hemispheres
127.9
2366
Female, age 91, both hemispheres
99.9
1939
Male, age 80, both hemispheres
49.8
2167
Male, age 76, both hemispheres
47.6
Reticulotegmental nucleus nTPM: 102.4
2325
Male, age 76, both hemispheres
141.3
2333
Male, age 80, both hemispheres
107.6
2322
Female, age 91, both hemispheres
105.6
2452
Male, age 74, both hemispheres
55.1
Spinal trigeminal nucleus, oral nTPM: 53.9
2737
Female, age 85, both hemispheres
73.0
2164
Male, age 80, both hemispheres
48.4
1978
Male, age 76, both hemispheres
40.3
Subcoeruleus area nTPM: 98.0
2323
Female, age 91, left hemisphere
146.1
1958
Male, age 80, both hemispheres
121.2
2089
Male, age 76, left hemisphere
118.8
2451
Male, age 74, both hemispheres
69.5
2369
Female, age 85, left hemisphere
34.4
Superior olive nTPM: 153.2
1875
Female, age 85, both hemispheres
235.7
2329
Male, age 80, right hemisphere
182.5
2561
Female, age 91, both hemispheres
120.8
2364
Male, age 74, right hemisphere
116.6
2020
Male, age 76, both hemispheres
110.2
Ventral periolivary nuclei nTPM: 171.7
2130
Female, age 85, both hemispheres
224.4
2165
Male, age 80, both hemispheres
221.3
2794
Female, age 91, left hemisphere
144.7
2023
Male, age 76, both hemispheres
96.4
Ventrolateral tegmental area, A5 NE cell group nTPM: 123.8
2449
Male, age 74, both hemispheres
199.8
1959
Male, age 76, both hemispheres
147.7
2161
Male, age 80, both hemispheres
136.1
2840
Female, age 85, both hemispheres
96.9
2359
Male, age 61, both hemispheres
89.7
2456
Female, age 91, both hemispheres
72.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
142.8
Pig sample
Sample description
nTPM
Pons nTPM: 142.8
Samples: 4
Max nTPM: 226.8
Min nTPM: 49.5
Sample A
Female
168.7
Sample B
Female
49.5
Sample C
Male
126.2
Sample D
Male
226.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
