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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:177.9 nTPM
GTEx:177.9 nTPM
FANTOM5:531.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA010817
Squamous epithelial cells Medium

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

177.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 177.9
Samples: 156

Max nTPM: 443.2
Min nTPM: 41.3
Std nTPM: 80.1
Median nTPM: 169.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 443.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 409.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 408.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 392.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 368.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 349.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 326.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 323.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 313.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 308.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 308.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 304.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 300.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 299.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 297.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 291.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 282.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 280.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 277.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 271.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 270.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 269.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 261.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 258.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 257.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 254.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 254.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 252.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 250.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 248.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 242.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 241.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 238.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 237.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 236.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 235.7
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 230.9
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 227.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 226.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 225.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 224.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 223.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 220.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 217.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 216.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 215.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 209.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 204.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 204.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 202.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 202.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 201.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 199.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 198.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 197.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 195.1
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 194.2
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 193.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 193.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 189.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 187.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 186.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 186.8
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 185.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 181.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 181.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 179.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 179.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 179.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 176.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 175.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 174.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 173.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 173.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 172.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 171.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 170.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 170.3
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 169.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 167.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 166.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 166.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 165.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 155.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 155.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 154.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 154.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 152.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 152.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 152.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 151.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 149.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 148.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 146.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 145.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 145.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 141.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 140.6
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 140.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 138.8
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 136.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 135.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 134.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 133.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 133.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 131.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 127.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 127.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 125.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 124.9
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 122.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 122.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 119.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 119.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 119.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 117.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 117.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 114.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 114.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 113.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 112.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 112.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 110.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 109.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 109.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 109.1
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 108.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 106.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 106.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 104.7
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 103.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 102.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 101.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 100.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 97.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 96.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 93.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 93.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 92.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 85.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 81.9
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 76.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 75.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 74.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 73.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 72.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 70.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 69.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 66.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 65.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 64.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 63.0
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 59.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 57.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 48.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 41.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

531.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 531.6
FF:10204-103F6 68 years, female 531.6

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