MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.0 nTPM
HPA Brain:49.3 nTPM
GTEx:20.0 nTPM
FANTOM5:39.6 Scaled Tags Per Million
Pig:34.6 nTPM
Mouse:25.9 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.9
2586 Male, age 75, left hemisphere 62.8
2666 Male, age 74, left hemisphere 51.6
1827 Male, age 72, unknown 47.7
2828 Female, age 72, unknown 46.4
2019 Male, age 18, unknown 41.7
1833 Male, age 53, unknown 40.5
2219 Male, age 76, both hemispheres 39.9
1830 Male, age 51, unknown 36.8
1870 Female, age 42, unknown 36.2
2411 Female, age 72, unknown 35.8
Dorsal raphe nucleus
nTPM: 42.0
2047 Male, age 72, unknown 46.7
1828 Male, age 53, unknown 43.4
2298 Female, age 72, unknown 42.3
2750 Male, age 76, both hemispheres 42.1
2016 Female, age 72, unknown 35.4
Inferior colliculus
nTPM: 38.7
2849 Male, age 72, unknown 41.4
1890 Male, age 53, unknown 40.6
2097 Female, age 72, unknown 37.1
1848 Female, age 42, unknown 35.5
Median raphe nucleus
nTPM: 48.1
2220 Male, age 76, midline 48.1
Periaquaductal grey, anterior
nTPM: 49.0
1947 Male, age 18, unknown 50.9
1795 Male, age 51, unknown 50.4
2502 Female, age 75, unknown 45.8
Periaquaductal grey, dorsal
nTPM: 40.2
2850 Male, age 76, both hemispheres 47.0
1831 Male, age 72, unknown 41.9
1840 Male, age 53, unknown 37.4
2464 Female, age 72, unknown 34.4
Periaquaductal grey, lateral
nTPM: 41.5
2140 Male, age 76, both hemispheres 45.1
2272 Male, age 74, both hemispheres 40.7
2053 Male, age 18, unknown 38.8
Pretectal area
nTPM: 47.9
1816 Male, age 51, unknown 60.4
1944 Female, age 72, unknown 55.9
2007 Male, age 72, unknown 54.9
1817 Female, age 42, unknown 53.0
2407 Male, age 75, both hemispheres 49.9
1815 Male, age 53, unknown 48.0
2667 Female, age 75, unknown 44.8
2316 Male, age 76, right hemisphere 43.1
2224 Female, age 72, unknown 39.4
2273 Male, age 74, both hemispheres 39.0
2825 Male, age 18, unknown 38.8
Red nucleus
nTPM: 40.6
2584 Male, age 75, left hemisphere 60.8
2725 Female, age 75, unknown 49.3
2785 Male, age 18, unknown 43.9
2588 Male, age 74, left hemisphere 43.7
2823 Male, age 76, right hemisphere 38.0
1904 Male, age 53, unknown 37.3
2769 Male, age 72, unknown 37.0
2227 Male, age 72, unknown 36.7
2503 Female, age 72, unknown 36.6
1821 Female, age 72, unknown 35.3
1865 Male, age 51, unknown 34.9
1954 Female, age 42, unknown 33.9
Substantia nigra
nTPM: 49.3
1916 Female, age 42, unknown 62.2
2665 Male, age 74, both hemispheres 61.5
1941 Male, age 53, unknown 52.5
1851 Male, age 51, unknown 52.3
1889 Female, age 72, unknown 48.7
2583 Male, age 75, right hemisphere 48.7
2699 Male, age 18, unknown 46.7
2590 Female, age 75, unknown 43.1
2241 Male, age 72, unknown 39.6
2409 Female, age 72, unknown 38.0
Superior colliculus
nTPM: 44.4
2261 Male, age 18, unknown 54.7
2087 Female, age 72, unknown 50.9
2664 Male, age 75, both hemispheres 48.7
2668 Female, age 75, unknown 45.8
1796 Male, age 53, unknown 45.1
1839 Male, age 51, unknown 41.3
1913 Female, age 42, unknown 40.1
2587 Male, age 74, left hemisphere 40.1
1995 Male, age 72, unknown 39.9
1895 Male, age 76, right hemisphere 37.4
Ventral tegmental area
nTPM: 44.2
2218 Male, age 76, both hemispheres 48.5
2410 Female, age 72, unknown 45.5
1942 Male, age 51, unknown 45.2
1915 Female, age 42, unknown 44.4
2021 Male, age 53, unknown 44.4
2223 Female, age 72, unknown 37.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.0
Samples: 139

Max nTPM: 39.2
Min nTPM: 10.0
Std nTPM: 5.8
Median nTPM: 19.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 39.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 38.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 33.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 33.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 31.5
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 30.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 29.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 28.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 28.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 28.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 39.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.6
FF:10158-103A5 76 years, female 39.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.2
Samples: 4

Max nTPM: 33.7
Min nTPM: 23.2
Sample A Female 32.1
Sample B Female 23.2
Sample C Male 33.7
Sample D Male 23.8
Midbrain
nTPM: 31.5
Samples: 4

Max nTPM: 42.8
Min nTPM: 23.3
Sample A Female 24.0
Sample B Female 23.3
Sample C Male 42.8
Sample D Male 36.0
Periaqueductal gray
nTPM: 24.3
Samples: 3

Max nTPM: 29.6
Min nTPM: 20.3
Sample B Female 23.0
Sample C Male 29.6
Sample D Male 20.3
Superior colliculi
nTPM: 34.6
Samples: 4

Max nTPM: 41.5
Min nTPM: 25.2
Sample A Female 35.0
Sample B Female 25.2
Sample C Male 41.5
Sample D Male 36.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 30.4
Min nTPM: 19.8
Sample A Male 28.4
Sample B Male 19.8
Sample C Female 25.2
Sample D Female 30.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
67979016 Antisense, RP_040923_01_H07, Mouse strain C57BL/6J (56 days, male) 4.3

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