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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:148.2 nTPM
HPA Brain:107.7 nTPM
GTEx:148.2 nTPM
FANTOM5:109.3 Scaled Tags Per Million
Pig:175.7 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 95.4
2194 Female, age 79, both hemispheres 106.8
2816 Male, age 47, midline 104.3
1981 Female, age 72, midline 102.3
2048 Male, age 55, midline 85.7
2565 Male, age 75, midline 77.9
Cervical spinal cord, dorsal horn
nTPM: 105.1
2296 Male, age 66, both hemispheres 156.1
2173 Female, age 72, unknown 132.2
1877 Male, age 55, unknown 95.5
2721 Male, age 90, both hemispheres 92.8
2069 Male, age 47, both hemispheres 85.0
2297 Male, age 75, both hemispheres 69.2
Cervical spinal cord, ventral horn
nTPM: 107.7
2820 Female, age 79, both hemispheres 136.7
2068 Male, age 55, unknown 130.0
2098 Female, age 72, unknown 100.7
2480 Male, age 75, both hemispheres 93.8
2809 Male, age 90, both hemispheres 92.6
2295 Male, age 66, both hemispheres 92.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 148.2
Samples: 159

Max nTPM: 287.5
Min nTPM: 39.5
Std nTPM: 47.0
Median nTPM: 147.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 287.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 277.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 252.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 240.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 234.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 233.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 232.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 230.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 230.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 228.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 226.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 224.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 224.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 222.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 218.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 216.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 213.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 212.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 210.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 204.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 201.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 200.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 199.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 194.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 194.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 191.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 190.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 190.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 188.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 188.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 187.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 187.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 186.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 185.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 185.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 183.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 182.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 181.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 178.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 178.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 172.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 172.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 172.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 172.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 170.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 170.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 170.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 170.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 169.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 169.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 168.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 168.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 166.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 166.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 166.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 165.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 164.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 164.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 163.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 163.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 163.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 162.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 160.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 158.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 158.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 157.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 155.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 153.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 151.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 151.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 150.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 150.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 149.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 149.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 148.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 148.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 148.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 148.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 148.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 147.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 145.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 145.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 144.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 144.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 142.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 142.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 141.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 141.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 141.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 140.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 137.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 137.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 136.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 135.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 135.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 135.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 134.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 134.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 134.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 133.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 133.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 131.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 129.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 129.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 126.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 125.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 124.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 124.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 122.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 121.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 121.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 121.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 119.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 118.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 117.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 117.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 117.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 113.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 113.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 112.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 111.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 110.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 110.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 110.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 109.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 108.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 107.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 107.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 107.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 106.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 105.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 104.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 103.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 102.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 102.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 101.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 99.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 97.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 97.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 97.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 96.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 94.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 93.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 90.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 87.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 87.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 86.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 85.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 80.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 75.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 75.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 74.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 62.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 60.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 60.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 57.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 57.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 47.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 39.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 109.3
FF:10181-103D1 60 years, female 126.8
FF:10159-103A6 76 years, female 91.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 157.5
Samples: 4

Max nTPM: 165.2
Min nTPM: 145.9
Sample A Female 145.9
Sample B Female 158.7
Sample C Male 160.0
Sample D Male 165.2
Ventral spinal cord
nTPM: 175.7
Samples: 4

Max nTPM: 190.0
Min nTPM: 165.3
Sample A Female 173.9
Sample B Female 165.3
Sample C Male 173.5
Sample D Male 190.0

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