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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:385.3 nTPM
HPA Brain:37.5 nTPM
GTEx:385.3 nTPM
FANTOM5:727.0 Scaled Tags Per Million
Pig:101.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 25.5
1981 Female, age 72, midline 44.8
2194 Female, age 79, both hemispheres 25.5
2048 Male, age 55, midline 22.5
2816 Male, age 47, midline 18.2
2565 Male, age 75, midline 16.4
Cervical spinal cord, dorsal horn
nTPM: 30.1
2069 Male, age 47, both hemispheres 63.9
2173 Female, age 72, unknown 45.1
2721 Male, age 90, both hemispheres 21.8
2296 Male, age 66, both hemispheres 20.9
1877 Male, age 55, unknown 19.1
2297 Male, age 75, both hemispheres 9.6
Cervical spinal cord, ventral horn
nTPM: 37.5
2098 Female, age 72, unknown 149.0
2295 Male, age 66, both hemispheres 28.3
2809 Male, age 90, both hemispheres 18.9
2820 Female, age 79, both hemispheres 11.9
2068 Male, age 55, unknown 8.6
2480 Male, age 75, both hemispheres 8.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

385.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 385.3
Samples: 159

Max nTPM: 1526.6
Min nTPM: 8.3
Std nTPM: 352.3
Median nTPM: 284.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1526.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1466.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1439.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1397.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1372.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1362.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1248.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1218.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1208.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1201.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1098.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1080.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1057.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1022.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 962.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 955.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 948.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 898.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 868.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 732.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 729.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 719.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 718.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 716.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 671.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 663.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 660.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 651.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 651.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 642.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 635.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 634.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 619.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 579.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 578.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 572.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 569.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 544.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 529.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 529.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 514.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 503.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 500.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 486.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 485.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 464.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 451.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 445.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 439.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 437.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 435.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 432.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 428.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 425.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 412.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 405.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 397.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 380.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 360.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 359.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 353.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 344.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 343.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 340.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 336.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 331.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 330.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 326.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 325.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 318.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 318.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 315.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 313.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 313.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 311.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 300.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 293.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 293.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 285.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 284.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 271.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 270.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 270.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 261.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 256.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 254.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 252.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 246.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 243.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 236.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 231.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 229.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 228.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 225.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 209.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 204.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 201.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 201.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 196.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 195.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 190.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 182.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 168.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 167.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 163.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 162.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 160.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 159.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 154.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 152.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 151.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 151.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 149.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 144.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 144.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 141.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 135.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 133.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 133.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 131.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 130.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 127.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 119.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 113.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 111.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 107.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 106.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 103.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 99.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 92.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 92.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 91.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 90.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 83.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 83.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 79.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 75.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 70.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 70.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 68.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 66.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 65.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 60.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 59.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 57.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 55.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 51.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 45.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 41.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 41.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 35.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 34.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 30.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 29.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 25.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 17.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 11.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 10.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 8.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

727.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 727.0
FF:10181-103D1 60 years, female 843.5
FF:10159-103A6 76 years, female 610.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 101.2
Samples: 4

Max nTPM: 162.2
Min nTPM: 15.5
Sample A Female 15.5
Sample B Female 153.7
Sample C Male 162.2
Sample D Male 73.2
Ventral spinal cord
nTPM: 56.1
Samples: 4

Max nTPM: 75.9
Min nTPM: 17.9
Sample A Female 17.9
Sample B Female 75.9
Sample C Male 65.1
Sample D Male 65.6

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