We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NRCAM
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • NRCAM
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:20.6 nTPM
HPA Brain:202.5 nTPM
GTEx:20.6 nTPM
FANTOM5:238.4 Scaled Tags Per Million
Pig:125.4 nTPM
Mouse:116.0 nTPM
Allen mouse:10.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.5
Sample id Sample description nTPM
Amygdala
nTPM: 187.1
2814 Male, age 76, right hemisphere 288.0
2514 Male, age 75, right hemisphere 191.7
1987 Female, age 91, left hemisphere 177.4
2517 Female, age 94, left hemisphere 148.4
2695 Female, age 67, right hemisphere 129.9
Basal amygdala
nTPM: 185.6
1955 Male, age 76, both hemispheres 246.7
2243 Female, age 91, right hemisphere 233.5
2609 Male, age 75, right hemisphere 191.2
2110 Male, age 80, left hemisphere 178.2
2685 Female, age 94, left hemisphere 158.3
2827 Female, age 67, right hemisphere 105.4
Central amygdala
nTPM: 181.5
1905 Male, age 76, both hemispheres 275.1
2239 Male, age 80, left hemisphere 207.6
2515 Male, age 75, right hemisphere 192.8
2701 Female, age 91, right hemisphere 128.9
2826 Female, age 94, left hemisphere 103.1
Corticomedial amygdala
nTPM: 202.5
2240 Male, age 76, both hemispheres 269.7
2429 Female, age 94, left hemisphere 208.7
2428 Male, age 75, right hemisphere 205.5
2829 Male, age 80, left hemisphere 192.6
2242 Female, age 91, right hemisphere 181.3
2535 Female, age 67, right hemisphere 157.1
Lateral amygdala
nTPM: 155.2
1883 Male, age 76, both hemispheres 245.7
2516 Male, age 75, right hemisphere 175.2
2256 Male, age 80, left hemisphere 158.1
2255 Female, age 91, right hemisphere 153.3
2534 Female, age 94, left hemisphere 133.7
2830 Female, age 67, right hemisphere 65.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 20.6
Samples: 152

Max nTPM: 56.0
Min nTPM: 1.7
Std nTPM: 11.6
Median nTPM: 18.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 56.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 56.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 49.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 47.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 43.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 42.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 42.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 42.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 41.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 41.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 40.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 40.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 40.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 38.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 38.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 37.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 37.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 37.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 36.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 35.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 35.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 35.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 35.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 34.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 34.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 33.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 32.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 32.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 31.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 31.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 31.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 30.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 30.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 28.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 28.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 27.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 27.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 27.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 27.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 27.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 27.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 26.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 26.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 25.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 25.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 24.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 24.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 24.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 24.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 23.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 23.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 23.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 23.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 23.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 21.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 21.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 21.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 21.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 21.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 21.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 21.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 21.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 21.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 21.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 20.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 20.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 20.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 20.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 20.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 20.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 20.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 20.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 19.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 18.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 18.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 18.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 18.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 18.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 17.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 17.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 17.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 17.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 17.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 17.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 17.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 17.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 16.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 16.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 16.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 16.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 16.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 16.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 15.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 15.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 15.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 15.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 15.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 14.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 14.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 14.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 14.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 14.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 14.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 14.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 14.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 13.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 13.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 13.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 13.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 12.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 12.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 12.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 11.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 11.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 11.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 10.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 10.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 10.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 10.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 9.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 9.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 9.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 9.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 9.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 9.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 9.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 9.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 9.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 8.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 8.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 8.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 8.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 8.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 8.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 7.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 7.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 7.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 7.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 7.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 7.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 6.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 6.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 6.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 5.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 5.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 5.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 5.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 4.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 3.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

238.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 238.4
FF:10151-102I7 76 years, female 238.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.4
Pig sample Sample description nTPM
Amygdala
nTPM: 125.5
Samples: 4

Max nTPM: 155.2
Min nTPM: 91.4
Sample A Female 155.2
Sample B Female 91.4
Sample C Male 136.1
Sample D Male 119.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 116.0
Samples: 4

Max nTPM: 120.5
Min nTPM: 104.2
Sample A Male 120.2
Sample B Male 104.2
Sample C Female 120.5
Sample D Female 119.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.0
172 Antisense, RP_Baylor_103411, Mouse strain C57BL/6J (56 days, male) 10.0
173 Antisense, RP_Baylor_103411, Mouse strain C57BL/6J (56 days, male) 5.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org