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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
43.2
Sample id
Sample description
nTPM
Amygdala nTPM: 42.7
2814
Male, age 76, right hemisphere
48.8
1987
Female, age 91, left hemisphere
45.1
2514
Male, age 75, right hemisphere
44.4
2695
Female, age 67, right hemisphere
44.2
2517
Female, age 94, left hemisphere
31.2
Basal amygdala nTPM: 40.5
1955
Male, age 76, both hemispheres
44.2
2827
Female, age 67, right hemisphere
43.4
2110
Male, age 80, left hemisphere
43.3
2243
Female, age 91, right hemisphere
39.0
2609
Male, age 75, right hemisphere
37.1
2685
Female, age 94, left hemisphere
35.8
Central amygdala nTPM: 40.9
1905
Male, age 76, both hemispheres
46.5
2826
Female, age 94, left hemisphere
43.4
2239
Male, age 80, left hemisphere
39.0
2515
Male, age 75, right hemisphere
38.4
2701
Female, age 91, right hemisphere
37.0
Corticomedial amygdala nTPM: 43.2
2428
Male, age 75, right hemisphere
51.9
2429
Female, age 94, left hemisphere
49.6
2829
Male, age 80, left hemisphere
45.1
2240
Male, age 76, both hemispheres
41.7
2242
Female, age 91, right hemisphere
38.0
2535
Female, age 67, right hemisphere
33.3
Lateral amygdala nTPM: 40.4
2830
Female, age 67, right hemisphere
58.5
1883
Male, age 76, both hemispheres
45.7
2516
Male, age 75, right hemisphere
45.1
2534
Female, age 94, left hemisphere
34.8
2255
Female, age 91, right hemisphere
29.8
2256
Male, age 80, left hemisphere
28.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 45.0
Samples: 152
Max nTPM: 82.9
Min nTPM: 26.5
Std nTPM: 11.6
Median nTPM: 42.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
82.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
82.6
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
77.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
75.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
73.0
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
71.8
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
71.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
71.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
69.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
69.3
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
68.8
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
68.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
66.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
66.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
65.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
65.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
60.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
59.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
59.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
56.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
55.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
55.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
54.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
54.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
53.5
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
53.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
52.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
52.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
52.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
52.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
51.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
51.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
50.8
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
50.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
50.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
50.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
50.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
50.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
50.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
49.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
49.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
48.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
48.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
48.7
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
48.5
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
48.5
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
47.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
47.7
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
47.6
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
47.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
47.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
46.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
46.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
46.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
46.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
45.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
45.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
45.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
45.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
44.9
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
44.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
44.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
44.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
44.4
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
44.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
44.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
44.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
43.8
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
43.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
43.5
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
42.9
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
42.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
42.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
42.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
42.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
42.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
42.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
41.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
41.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
41.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
41.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
41.6
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
41.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
41.4
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
41.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
41.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
41.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
41.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
40.7
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
40.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
39.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
39.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
39.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
39.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
39.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
39.3
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
39.2
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
39.1
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
38.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
38.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
38.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
38.8
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
38.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
38.4
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
38.3
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
38.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
38.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
38.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
37.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
37.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
37.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
37.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
37.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
37.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
37.2
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
37.1
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
37.0
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
37.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
36.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
36.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
36.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
36.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
36.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
35.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
35.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
35.4
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
35.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
35.2
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
35.0
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
34.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
34.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
34.0
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
34.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
33.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
33.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
33.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
32.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
32.7
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
32.5
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
32.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
31.8
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
31.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
31.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
31.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
30.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
30.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
29.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
29.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
27.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
27.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
27.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
26.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
101.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 101.6
Samples: 4
Max nTPM: 106.1
Min nTPM: 91.1
Sample A
Male
106.1
Sample B
Male
103.4
Sample C
Female
91.1
Sample D
Female
105.7
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
