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ABCC6
HPA
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  • ABCC6
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ABCC6
Synonyms ARA, EST349056, MLP1, MRP6, PXE, URG7
Gene descriptioni

Full gene name according to HGNC.

ATP binding cassette subfamily C member 6
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Disease related genes
Enzymes
Human disease related genes
Plasma proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 16
Cytoband p13.11
Chromosome location (bp) 16149565 - 16223522
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000091262 (version 109)
Entrez gene 368
HGNC HGNC:57
UniProt O95255 (UniProt - Evidence at protein level)
neXtProt NX_O95255
GeneCards ABCC6
Antibodypedia ABCC6 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

[Isoform 1]: ATP-dependent transporter of the ATP-binding cassette (ABC) family that actively extrudes physiological compounds, and xenobiotics from cells. Mediates ATP-dependent transport of glutathione conjugates such as leukotriene-c4 (LTC4) and N-ethylmaleimide S-glutathione (NEM-GS) (in vitro), and an anionic cyclopentapeptide endothelin antagonist, BQ-123 1, 2. May contribute to regulate the transport of organic compounds in testes across the blood-testis-barrier (Probable). Does not appear to actively transport drugs outside the cell. Confers low levels of cellular resistance to etoposide, teniposide, anthracyclines and cisplatin 3.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Translocase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Sensory transduction, Transport, Vision
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). The encoded protein, a member of the MRP subfamily, is involved in multi-drug resistance. Mutations in this gene cause pseudoxanthoma elasticum. Alternatively spliced transcript variants that encode different proteins have been described for this gene. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ABCC6-201
ENSP00000205557
ENST00000205557
O95255
[Direct mapping] ATP-binding cassette sub-family C member 6
Show all
Enzymes
   ENZYME proteins
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
Disease related genes
Potential drug targets
Human disease related genes
   Cardiovascular diseases
   Vascular diseases
   Congenital malformations
   Congenital malformations of skin
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000166 [nucleotide binding]
GO:0005524 [ATP binding]
GO:0005576 [extracellular region]
GO:0005654 [nucleoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0007601 [visual perception]
GO:0009410 [response to xenobiotic stimulus]
GO:0009925 [basal plasma membrane]
GO:0010467 [gene expression]
GO:0015431 [ABC-type glutathione S-conjugate transporter activity]
GO:0015867 [ATP transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016887 [ATP hydrolysis activity]
GO:0022857 [transmembrane transporter activity]
GO:0030505 [inorganic diphosphate transport]
GO:0030643 [cellular phosphate ion homeostasis]
GO:0032026 [response to magnesium ion]
GO:0042626 [ATPase-coupled transmembrane transporter activity]
GO:0043225 [ATPase-coupled inorganic anion transmembrane transporter activity]
GO:0046034 [ATP metabolic process]
GO:0050896 [response to stimulus]
GO:0055062 [phosphate ion homeostasis]
GO:0055074 [calcium ion homeostasis]
GO:0055085 [transmembrane transport]
GO:0071716 [leukotriene transport]
GO:0140359 [ABC-type transporter activity]
GO:1904383 [response to sodium phosphate]
Show all
1503 aa
164.9 kDa
No >9
ABCC6-203
ENSP00000507301
ENST00000574094
A0A804HJ04
[Direct mapping] ATP-binding cassette sub-family C member 6
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Vascular diseases
   Congenital malformations
   Congenital malformations of skin
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005524 [ATP binding]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0042626 [ATPase-coupled transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0140359 [ABC-type transporter activity]
Show all
467 aa
52.7 kDa
No 8
ABCC6-204
ENSP00000461686
ENST00000575728
O95255
[Direct mapping] ATP-binding cassette sub-family C member 6
Show all
Enzymes
   ENZYME proteins
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
Disease related genes
Potential drug targets
Human disease related genes
   Cardiovascular diseases
   Vascular diseases
   Congenital malformations
   Congenital malformations of skin
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000166 [nucleotide binding]
GO:0005524 [ATP binding]
GO:0005576 [extracellular region]
GO:0005654 [nucleoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0007601 [visual perception]
GO:0009410 [response to xenobiotic stimulus]
GO:0009925 [basal plasma membrane]
GO:0010467 [gene expression]
GO:0015431 [ABC-type glutathione S-conjugate transporter activity]
GO:0015867 [ATP transport]
GO:0016020 [membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016887 [ATP hydrolysis activity]
GO:0022857 [transmembrane transporter activity]
GO:0042626 [ATPase-coupled transmembrane transporter activity]
GO:0043225 [ATPase-coupled inorganic anion transmembrane transporter activity]
GO:0046034 [ATP metabolic process]
GO:0050896 [response to stimulus]
GO:0055062 [phosphate ion homeostasis]
GO:0055074 [calcium ion homeostasis]
GO:0055085 [transmembrane transport]
GO:0071716 [leukotriene transport]
GO:0140359 [ABC-type transporter activity]
Show all
99 aa
10.8 kDa
No 1

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