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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
179.2
nTPM
GTEx:
179.2
nTPM
FANTOM5:
30.4
Scaled Tags Per Million
Pig:
29.9
nTPM
Mouse:
30.9
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA042955
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA060190
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
High
Inner nuclear layer
Not detected
Inner plexiform layer
Medium
Ganglion cells
Not detected
Nerve fiber layer
Medium
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
179.2
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 179.2
Samples: 105
Max nTPM: 381.2
Min nTPM: 70.5
Std nTPM: 50.2
Median nTPM:
413_1
59 years, female
381.2
414_1
84 years, female
352.1
142_1
61 years, female
291.1
466_1
57 years, female
287.4
217_1
76 years, male
275.5
149_1
88 years, male
265.2
266_1
85 years, male
264.4
229_1
69 years, female
254.9
499_1
55 years, female
251.1
43_1
64 years, female
244.7
377_1
82 years, female
240.1
501_1
88 years, male
235.5
394_1
75 years, female
229.2
288_1
66 years, female
225.8
265_1
87 years, male
224.2
162_1
79 years, female
223.9
313_1
79 years, female
221.9
376_1
75 years, female
221.7
415_1
77 years, female
221.1
137_1
83 years, male
216.8
335_1
73 years, female
215.6
153_1
70 years, female
213.9
4_1
88 years, female
211.2
81_1
67 years, male
209.4
468_1
89 years, male
208.9
172_1
72 years, female
206.3
246_1
77 years, male
205.8
518_1
75 years, female
200.6
189_1
76 years, male
198.3
404_1
82 years, female
197.2
396_1
62 years, male
196.1
6_1
73 years, female
195.7
32_1
67 years, male
195.6
503_1
68 years, male
194.5
237_1
82 years, male
190.3
163_1
78 years, male
189.4
495_1
57 years, female
187.4
526_1
61 years, male
186.0
406_1
79 years, male
185.9
264_1
73 years, female
183.0
286_1
68 years, female
182.8
139_1
64 years, female
181.7
389_1
86 years, female
181.3
126_1
63 years, male
181.2
311_1
78 years, male
180.6
318_1
68 years, male
180.6
18_1
88 years, male
178.7
35_1
74 years, female
178.2
315_1
62 years, female
177.7
352_1
62 years, male
177.7
405_1
91 years, male
177.7
324_1
76 years, male
177.3
517_1
88 years, male
174.2
89_1
63 years, male
173.5
115_1
83 years, male
172.7
254_1
77 years, female
172.2
177_1
74 years, male
170.6
308_1
70 years, female
170.5
490_1
67 years, female
169.5
379_1
60 years, male
168.1
375_1
74 years, female
167.7
316_1
62 years, male
166.6
292_1
71 years, male
166.4
109_1
81 years, female
166.3
314_1
67 years, male
164.9
117_1
61 years, male
163.6
17_1
71 years, male
160.6
480_1
63 years, male
160.5
425_1
59 years, female
156.4
356_1
87 years, female
156.2
319_1
81 years, male
155.7
295_1
61 years, female
154.7
120_1
70 years, female
150.9
291_1
76 years, male
150.8
348_1
84 years, male
150.1
354_1
81 years, female
149.6
293_1
68 years, female
149.3
350_1
84 years, female
148.1
351_1
91 years, male
146.1
251_1
78 years, male
144.9
349_1
83 years, male
144.4
243_1
75 years, male
143.6
9_1
66 years, female
143.2
506_1
65 years, male
140.3
145_1
84 years, male
138.1
452_1
88 years, female
135.6
353_1
82 years, female
133.8
320_1
89 years, female
132.7
307_1
66 years, female
129.4
491_1
89 years, female
129.4
173_1
67 years, male
128.8
447_1
81 years, male
124.6
355_1
70 years, female
123.4
322_1
76 years, male
122.9
218_1
71 years, female
122.5
2_1
77 years, female
121.1
321_1
62 years, female
120.9
317_1
60 years, male
118.8
386_1
76 years, male
115.9
347_1
72 years, male
108.4
119_1
70 years, female
107.7
384_1
83 years, male
107.7
42_1
85 years, male
102.4
99_1
64 years, male
99.1
41_1
94 years, female
70.5
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
