MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.8 nTPM
HPA Brain:38.8 nTPM
GTEx:10.8 nTPM
FANTOM5:36.1 Scaled Tags Per Million
Pig:40.7 nTPM
Mouse:26.9 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.5
1827 Male, age 72, unknown 38.6
1870 Female, age 42, unknown 36.6
2219 Male, age 76, both hemispheres 36.6
1833 Male, age 53, unknown 36.5
2411 Female, age 72, unknown 35.3
1830 Male, age 51, unknown 33.4
2586 Male, age 75, left hemisphere 33.2
2666 Male, age 74, left hemisphere 32.7
2019 Male, age 18, unknown 31.3
2828 Female, age 72, unknown 30.9
Dorsal raphe nucleus
nTPM: 34.3
2047 Male, age 72, unknown 36.1
2298 Female, age 72, unknown 34.7
2750 Male, age 76, both hemispheres 34.1
2016 Female, age 72, unknown 33.7
1828 Male, age 53, unknown 33.1
Inferior colliculus
nTPM: 38.8
2849 Male, age 72, unknown 42.7
1848 Female, age 42, unknown 38.9
2097 Female, age 72, unknown 38.3
1890 Male, age 53, unknown 35.3
Median raphe nucleus
nTPM: 37.6
2220 Male, age 76, midline 37.6
Periaquaductal grey, anterior
nTPM: 34.8
1947 Male, age 18, unknown 38.9
2502 Female, age 75, unknown 33.3
1795 Male, age 51, unknown 32.1
Periaquaductal grey, dorsal
nTPM: 35.6
1840 Male, age 53, unknown 41.3
2850 Male, age 76, both hemispheres 34.2
2464 Female, age 72, unknown 33.7
1831 Male, age 72, unknown 33.3
Periaquaductal grey, lateral
nTPM: 32.4
2053 Male, age 18, unknown 33.8
2272 Male, age 74, both hemispheres 32.1
2140 Male, age 76, both hemispheres 31.2
Pretectal area
nTPM: 34.5
1816 Male, age 51, unknown 38.0
1944 Female, age 72, unknown 36.4
2224 Female, age 72, unknown 36.4
1817 Female, age 42, unknown 35.9
2825 Male, age 18, unknown 35.2
2407 Male, age 75, both hemispheres 34.9
1815 Male, age 53, unknown 34.1
2007 Male, age 72, unknown 34.1
2667 Female, age 75, unknown 33.8
2273 Male, age 74, both hemispheres 31.7
2316 Male, age 76, right hemisphere 29.5
Red nucleus
nTPM: 33.5
1821 Female, age 72, unknown 38.0
2725 Female, age 75, unknown 37.4
2588 Male, age 74, left hemisphere 36.7
2503 Female, age 72, unknown 36.2
2584 Male, age 75, left hemisphere 34.3
1954 Female, age 42, unknown 33.3
1865 Male, age 51, unknown 31.6
2769 Male, age 72, unknown 31.1
2227 Male, age 72, unknown 31.0
1904 Male, age 53, unknown 30.8
2785 Male, age 18, unknown 30.8
2823 Male, age 76, right hemisphere 30.2
Substantia nigra
nTPM: 35.9
1916 Female, age 42, unknown 40.9
2241 Male, age 72, unknown 40.4
1941 Male, age 53, unknown 36.3
2665 Male, age 74, both hemispheres 35.8
1851 Male, age 51, unknown 35.2
1889 Female, age 72, unknown 35.2
2699 Male, age 18, unknown 35.1
2409 Female, age 72, unknown 34.5
2590 Female, age 75, unknown 33.8
2583 Male, age 75, right hemisphere 31.9
Superior colliculus
nTPM: 33.0
1839 Male, age 51, unknown 37.0
1895 Male, age 76, right hemisphere 37.0
2587 Male, age 74, left hemisphere 34.5
1796 Male, age 53, unknown 33.8
2261 Male, age 18, unknown 33.3
2087 Female, age 72, unknown 33.0
2668 Female, age 75, unknown 33.0
2664 Male, age 75, both hemispheres 30.8
1913 Female, age 42, unknown 30.2
1995 Male, age 72, unknown 27.7
Ventral tegmental area
nTPM: 34.3
1915 Female, age 42, unknown 36.0
2218 Male, age 76, both hemispheres 35.4
2410 Female, age 72, unknown 35.0
2021 Male, age 53, unknown 33.3
2223 Female, age 72, unknown 33.1
1942 Male, age 51, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.8
Samples: 139

Max nTPM: 20.8
Min nTPM: 2.8
Std nTPM: 2.8
Median nTPM: 10.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 20.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 19.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 17.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 17.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 16.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 15.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 15.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 15.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 15.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 14.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.1
FF:10158-103A5 76 years, female 36.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 40.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.1
Samples: 4

Max nTPM: 43.8
Min nTPM: 31.7
Sample A Female 43.8
Sample B Female 36.3
Sample C Male 40.4
Sample D Male 31.7
Midbrain
nTPM: 40.7
Samples: 4

Max nTPM: 44.0
Min nTPM: 37.1
Sample A Female 43.1
Sample B Female 38.7
Sample C Male 37.1
Sample D Male 44.0
Periaqueductal gray
nTPM: 38.8
Samples: 3

Max nTPM: 44.4
Min nTPM: 34.5
Sample B Female 37.5
Sample C Male 44.4
Sample D Male 34.5
Superior colliculi
nTPM: 40.0
Samples: 4

Max nTPM: 45.8
Min nTPM: 35.9
Sample A Female 45.8
Sample B Female 35.9
Sample C Male 36.6
Sample D Male 41.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.9
Samples: 4

Max nTPM: 28.2
Min nTPM: 25.1
Sample A Male 25.1
Sample B Male 27.6
Sample C Female 28.2
Sample D Female 26.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
69838741 Antisense, RP_050321_03_D10, Mouse strain C57BL/6J (56 days, male) 4.5

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