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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:310.7 nTPM
HPA Brain:102.4 nTPM
GTEx:310.7 nTPM
FANTOM5:334.3 Scaled Tags Per Million
Pig:8.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 79.6
1981 Female, age 72, midline 101.5
2048 Male, age 55, midline 85.5
2816 Male, age 47, midline 82.3
2194 Female, age 79, both hemispheres 81.9
2565 Male, age 75, midline 46.6
Cervical spinal cord, dorsal horn
nTPM: 102.4
2296 Male, age 66, both hemispheres 199.6
2173 Female, age 72, unknown 146.0
2069 Male, age 47, both hemispheres 94.0
1877 Male, age 55, unknown 81.5
2721 Male, age 90, both hemispheres 50.9
2297 Male, age 75, both hemispheres 42.7
Cervical spinal cord, ventral horn
nTPM: 88.1
2068 Male, age 55, unknown 111.2
2820 Female, age 79, both hemispheres 102.6
2098 Female, age 72, unknown 95.4
2480 Male, age 75, both hemispheres 83.0
2809 Male, age 90, both hemispheres 78.2
2295 Male, age 66, both hemispheres 58.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

310.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 310.7
Samples: 159

Max nTPM: 668.1
Min nTPM: 64.5
Std nTPM: 112.9
Median nTPM: 316.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 668.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 627.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 602.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 596.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 584.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 518.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 493.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 482.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 479.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 468.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 466.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 463.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 461.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 459.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 454.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 454.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 450.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 450.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 441.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 436.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 430.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 429.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 420.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 420.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 417.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 412.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 408.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 405.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 400.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 400.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 399.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 399.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 399.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 389.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 388.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 387.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 387.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 385.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 384.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 384.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 383.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 381.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 380.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 378.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 375.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 375.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 368.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 365.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 365.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 365.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 363.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 363.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 357.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 355.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 352.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 350.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 347.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 347.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 346.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 346.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 343.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 338.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 336.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 336.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 336.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 335.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 335.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 335.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 334.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 332.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 329.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 329.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 328.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 327.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 325.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 325.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 323.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 322.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 317.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 316.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 309.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 309.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 308.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 308.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 305.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 303.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 303.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 300.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 291.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 289.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 286.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 284.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 283.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 282.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 282.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 281.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 280.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 279.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 276.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 269.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 267.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 266.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 266.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 266.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 263.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 261.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 261.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 259.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 257.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 256.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 256.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 255.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 253.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 249.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 248.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 239.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 235.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 235.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 235.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 233.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 232.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 224.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 224.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 223.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 222.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 221.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 213.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 213.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 210.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 209.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 208.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 202.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 200.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 181.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 174.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 172.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 172.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 170.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 169.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 167.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 161.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 158.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 158.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 157.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 156.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 153.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 153.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 146.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 145.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 143.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 133.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 128.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 124.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 109.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 108.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 105.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 105.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 82.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 64.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

334.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 334.3
FF:10181-103D1 60 years, female 361.3
FF:10159-103A6 76 years, female 307.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 8.7
Samples: 4

Max nTPM: 11.2
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 11.2
Sample C Male 9.8
Sample D Male 7.9
Ventral spinal cord
nTPM: 8.2
Samples: 4

Max nTPM: 9.8
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 8.5
Sample C Male 7.9
Sample D Male 9.8

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