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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:132.7 nTPM
HPA Brain:102.6 nTPM
GTEx:132.7 nTPM
FANTOM5:96.2 Scaled Tags Per Million
Pig:66.5 nTPM
Mouse:106.7 nTPM
Allen mouse:2.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.6
Sample id Sample description nTPM
Amygdala
nTPM: 102.6
1987 Female, age 91, left hemisphere 115.9
2514 Male, age 75, right hemisphere 110.3
2695 Female, age 67, right hemisphere 108.1
2814 Male, age 76, right hemisphere 92.5
2517 Female, age 94, left hemisphere 86.1
Basal amygdala
nTPM: 78.3
2609 Male, age 75, right hemisphere 115.9
1955 Male, age 76, both hemispheres 83.5
2110 Male, age 80, left hemisphere 83.2
2243 Female, age 91, right hemisphere 70.8
2685 Female, age 94, left hemisphere 67.4
2827 Female, age 67, right hemisphere 49.0
Central amygdala
nTPM: 83.5
2515 Male, age 75, right hemisphere 100.6
1905 Male, age 76, both hemispheres 87.1
2239 Male, age 80, left hemisphere 79.0
2826 Female, age 94, left hemisphere 76.0
2701 Female, age 91, right hemisphere 75.0
Corticomedial amygdala
nTPM: 77.7
2428 Male, age 75, right hemisphere 102.6
2829 Male, age 80, left hemisphere 83.8
2429 Female, age 94, left hemisphere 76.5
2242 Female, age 91, right hemisphere 73.6
2240 Male, age 76, both hemispheres 72.5
2535 Female, age 67, right hemisphere 57.2
Lateral amygdala
nTPM: 83.1
2516 Male, age 75, right hemisphere 114.1
1883 Male, age 76, both hemispheres 91.9
2256 Male, age 80, left hemisphere 88.9
2255 Female, age 91, right hemisphere 75.6
2534 Female, age 94, left hemisphere 71.3
2830 Female, age 67, right hemisphere 57.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 132.7
Samples: 152

Max nTPM: 296.1
Min nTPM: 6.2
Std nTPM: 47.3
Median nTPM: 123.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 296.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 266.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 264.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 258.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 252.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 245.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 243.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 220.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 216.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 214.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 211.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 209.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 207.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 205.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 201.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 195.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 192.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 190.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 182.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 182.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 182.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 178.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 178.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 173.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 172.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 170.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 169.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 169.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 169.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 168.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 167.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 167.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 164.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 163.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 163.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 162.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 161.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 159.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 157.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 156.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 156.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 154.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 152.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 151.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 150.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 147.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 147.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 146.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 146.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 144.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 144.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 142.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 141.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 140.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 139.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 138.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 137.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 137.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 137.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 135.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 135.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 135.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 133.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 131.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 131.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 130.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 129.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 129.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 127.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 127.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 127.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 126.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 125.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 125.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 125.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 124.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 122.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 122.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 122.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 121.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 121.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 121.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 119.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 119.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 119.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 118.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 117.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 117.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 117.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 116.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 116.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 116.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 115.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 113.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 113.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 113.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 112.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 111.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 111.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 111.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 110.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 109.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 108.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 108.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 107.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 107.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 106.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 103.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 103.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 101.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 101.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 101.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 101.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 101.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 100.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 100.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 100.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 98.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 97.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 97.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 96.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 96.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 96.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 96.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 96.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 96.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 94.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 94.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 93.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 92.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 91.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 91.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 89.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 88.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 88.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 84.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 83.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 82.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 81.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 80.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 79.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 76.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 75.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 72.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 71.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 68.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 63.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 56.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 48.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 45.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 41.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

96.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 96.2
FF:10151-102I7 76 years, female 96.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.5
Pig sample Sample description nTPM
Amygdala
nTPM: 66.5
Samples: 4

Max nTPM: 70.9
Min nTPM: 57.7
Sample A Female 68.2
Sample B Female 70.9
Sample C Male 69.2
Sample D Male 57.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 106.7
Samples: 4

Max nTPM: 117.3
Min nTPM: 96.4
Sample A Male 96.4
Sample B Male 100.5
Sample C Female 117.3
Sample D Female 112.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.9
100143511 Antisense, RP_110407_01_E08, Mouse strain C57BL/6J (56 days, male) 2.9

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