We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RFFL
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RFFL
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:123.9 nTPM
FANTOM5:76.0 Scaled Tags Per Million
Pig:29.9 nTPM
Mouse:17.1 nTPM
Allen mouse:0.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 96.2
2396 Male, age 61, right hemisphere 127.4
2032 Female, age 42, unknown 90.5
2497 Male, age 66, unknown 70.6
Centromedial thalamic nucleus
nTPM: 101.0
2279 Female, age 85, left hemisphere 128.1
2401 Male, age 76, right hemisphere 73.9
Habenula
nTPM: 46.0
2252 Male, age 62, unknown 52.5
2203 Male, age 61, left hemisphere 48.4
1957 Male, age 80, both hemispheres 41.7
2276 Male, age 66, unknown 41.6
Lateral geniculate body
nTPM: 91.9
2575 Female, age 94, right hemisphere 138.6
2841 Male, age 80, both hemispheres 126.3
2035 Female, age 72, unknown 99.9
2659 Male, age 66, unknown 97.0
1953 Male, age 62, unknown 78.1
2857 Male, age 74, right hemisphere 67.0
2106 Female, age 67, right hemisphere 66.5
2399 Male, age 61, left hemisphere 61.4
Lateral thalamic nuclei
nTPM: 79.5
2765 Female, age 67, both hemispheres 106.8
2573 Female, age 94, left hemisphere 84.1
2661 Female, age 72, unknown 81.4
2577 Male, age 74, both hemispheres 77.3
1903 Male, age 76, left hemisphere 48.0
Medial dorsal thalamic nucleus
nTPM: 59.0
2660 Female, age 72, unknown 108.7
1971 Male, age 61, right hemisphere 73.1
2576 Male, age 74, both hemispheres 68.1
1930 Female, age 42, unknown 63.3
1859 Male, age 76, both hemispheres 59.9
2492 Male, age 75, right hemisphere 58.2
2039 Female, age 72, unknown 54.7
1810 Male, age 48, unknown 49.6
2402 Female, age 67, both hemispheres 48.7
2026 Male, age 62, unknown 48.3
2283 Male, age 80, right hemisphere 47.4
2572 Female, age 94, right hemisphere 47.3
2498 Male, age 66, unknown 40.0
Medial geniculate body
nTPM: 70.9
2571 Male, age 75, right hemisphere 102.0
2217 Female, age 72, unknown 86.3
2049 Male, age 76, both hemispheres 68.8
2657 Male, age 74, right hemisphere 68.5
2650 Female, age 94, left hemisphere 64.4
2207 Male, age 80, right hemisphere 63.7
1811 Female, age 42, unknown 42.4
Nucleus reuniens
nTPM: 108.0
2210 Female, age 85, left hemisphere 178.7
2205 Male, age 80, left hemisphere 95.2
2212 Female, age 67, left hemisphere 50.0
Nucleus rhomboideus
nTPM: 91.7
2280 Female, age 85, left hemisphere 152.7
2213 Female, age 67, left hemisphere 77.7
2206 Male, age 80, both hemispheres 44.7
Posterior thalamic nucleus
nTPM: 60.9
2266 Male, age 76, right hemisphere 85.7
2649 Female, age 94, both hemispheres 62.5
2655 Male, age 74, right hemisphere 54.6
2495 Female, age 67, right hemisphere 40.8
Pulvinar
nTPM: 70.5
2398 Male, age 61, left hemisphere 84.8
1932 Male, age 80, right hemisphere 80.6
1899 Female, age 42, unknown 78.5
1972 Male, age 62, unknown 78.1
2214 Male, age 76, right hemisphere 74.2
2724 Male, age 74, right hemisphere 71.1
1929 Male, age 48, unknown 68.6
2582 Female, age 72, unknown 61.3
2499 Male, age 66, unknown 59.2
2496 Female, age 67, right hemisphere 48.2
Subthalamic nucleus
nTPM: 123.9
2056 Female, age 72, unknown 175.1
2124 Male, age 62, unknown 156.1
2282 Male, age 61, both hemispheres 139.6
2216 Male, age 48, unknown 137.9
2275 Male, age 66, unknown 122.1
2779 Female, age 42, unknown 114.0
2658 Male, age 74, both hemispheres 99.2
2406 Female, age 72, unknown 47.1
Ventral posterolateral thalamic nucleus
nTPM: 83.3
2581 Female, age 72, unknown 106.3
2570 Male, age 75, right hemisphere 93.1
2740 Male, age 76, right hemisphere 85.6
2397 Male, age 61, right hemisphere 85.3
2578 Male, age 74, both hemispheres 81.8
2197 Male, age 80, both hemispheres 47.6
Ventral posteromedial thalamic nucleus
nTPM: 75.6
2127 Male, age 76, right hemisphere 94.2
2281 Male, age 75, right hemisphere 91.8
2653 Male, age 74, both hemispheres 75.5
2202 Male, age 61, left hemisphere 62.6
2758 Male, age 80, both hemispheres 53.6
Ventral thalamic nuclei
nTPM: 90.6
2291 Female, age 72, unknown 118.5
2858 Female, age 72, unknown 112.1
2652 Male, age 74, left hemisphere 105.2
2580 Male, age 66, unknown 104.0
1845 Male, age 48, unknown 87.5
1860 Male, age 76, both hemispheres 75.0
2204 Male, age 80, both hemispheres 74.2
2285 Male, age 62, unknown 72.0
1912 Female, age 42, unknown 66.9
Zona incerta
nTPM: 106.8
2215 Male, age 66, unknown 154.7
2822 Male, age 74, right hemisphere 116.8
2663 Female, age 72, unknown 106.6
2403 Male, age 62, unknown 100.0
2208 Male, age 80, right hemisphere 55.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

76.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 76.0
FF:10154-103A1 76 years, female 76.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.9
Pig sample Sample description nTPM
Thalamus
nTPM: 29.9
Samples: 4

Max nTPM: 48.9
Min nTPM: 19.6
Sample A Female 19.6
Sample B Female 26.4
Sample C Male 24.7
Sample D Male 48.9

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 17.1
Samples: 4

Max nTPM: 18.5
Min nTPM: 16.0
Sample A Male 18.5
Sample B Male 16.0
Sample C Female 16.9
Sample D Female 17.1

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.1
73584861 Antisense, RP_051206_01_C12, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org