MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:178.9 nTPM
HPA Brain:975.4 nTPM
GTEx:178.9 nTPM
FANTOM5:1152.9 Scaled Tags Per Million
Pig:759.3 nTPM
Mouse:60.5 nTPM
Allen mouse:15.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 975.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 957.0
1870 Female, age 42, unknown 1074.6
2411 Female, age 72, unknown 1053.2
2586 Male, age 75, left hemisphere 1045.4
2828 Female, age 72, unknown 1021.7
1830 Male, age 51, unknown 977.7
1833 Male, age 53, unknown 970.2
1827 Male, age 72, unknown 952.9
2019 Male, age 18, unknown 896.2
2666 Male, age 74, left hemisphere 820.7
2219 Male, age 76, both hemispheres 757.4
Dorsal raphe nucleus
nTPM: 859.9
2750 Male, age 76, both hemispheres 1034.0
2047 Male, age 72, unknown 840.6
1828 Male, age 53, unknown 822.5
2298 Female, age 72, unknown 807.7
2016 Female, age 72, unknown 794.6
Inferior colliculus
nTPM: 756.0
1848 Female, age 42, unknown 804.3
2097 Female, age 72, unknown 775.1
2849 Male, age 72, unknown 766.9
1890 Male, age 53, unknown 677.9
Median raphe nucleus
nTPM: 887.8
2220 Male, age 76, midline 887.8
Periaquaductal grey, anterior
nTPM: 957.3
2502 Female, age 75, unknown 1029.1
1947 Male, age 18, unknown 997.2
1795 Male, age 51, unknown 845.7
Periaquaductal grey, dorsal
nTPM: 748.7
2850 Male, age 76, both hemispheres 787.4
2464 Female, age 72, unknown 774.1
1840 Male, age 53, unknown 718.0
1831 Male, age 72, unknown 715.2
Periaquaductal grey, lateral
nTPM: 872.5
2272 Male, age 74, both hemispheres 899.0
2053 Male, age 18, unknown 885.5
2140 Male, age 76, both hemispheres 833.1
Pretectal area
nTPM: 860.1
2273 Male, age 74, both hemispheres 953.1
2316 Male, age 76, right hemisphere 938.3
2407 Male, age 75, both hemispheres 923.6
1815 Male, age 53, unknown 876.9
2825 Male, age 18, unknown 874.4
2667 Female, age 75, unknown 860.8
1817 Female, age 42, unknown 827.9
2007 Male, age 72, unknown 827.4
2224 Female, age 72, unknown 813.7
1816 Male, age 51, unknown 796.2
1944 Female, age 72, unknown 768.9
Red nucleus
nTPM: 975.4
1865 Male, age 51, unknown 1084.3
1821 Female, age 72, unknown 1060.5
2503 Female, age 72, unknown 1042.8
1904 Male, age 53, unknown 1031.2
2725 Female, age 75, unknown 1025.6
2227 Male, age 72, unknown 1010.2
2769 Male, age 72, unknown 1006.9
1954 Female, age 42, unknown 965.7
2785 Male, age 18, unknown 955.5
2823 Male, age 76, right hemisphere 883.5
2588 Male, age 74, left hemisphere 862.0
2584 Male, age 75, left hemisphere 777.2
Substantia nigra
nTPM: 866.3
1916 Female, age 42, unknown 1078.7
1851 Male, age 51, unknown 1012.9
1941 Male, age 53, unknown 996.3
1889 Female, age 72, unknown 855.9
2241 Male, age 72, unknown 849.4
2590 Female, age 75, unknown 848.0
2699 Male, age 18, unknown 838.0
2409 Female, age 72, unknown 822.3
2583 Male, age 75, right hemisphere 771.6
2665 Male, age 74, both hemispheres 589.7
Superior colliculus
nTPM: 911.4
2664 Male, age 75, both hemispheres 1039.0
1913 Female, age 42, unknown 1019.1
2587 Male, age 74, left hemisphere 949.7
2261 Male, age 18, unknown 925.3
1995 Male, age 72, unknown 920.4
1796 Male, age 53, unknown 918.7
1839 Male, age 51, unknown 895.7
1895 Male, age 76, right hemisphere 862.0
2668 Female, age 75, unknown 801.9
2087 Female, age 72, unknown 782.4
Ventral tegmental area
nTPM: 924.3
2410 Female, age 72, unknown 1024.5
2223 Female, age 72, unknown 971.3
1915 Female, age 42, unknown 937.8
2218 Male, age 76, both hemispheres 921.6
2021 Male, age 53, unknown 853.7
1942 Male, age 51, unknown 836.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 178.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 178.9
Samples: 139

Max nTPM: 353.0
Min nTPM: 88.1
Std nTPM: 47.2
Median nTPM: 170.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 353.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 350.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 320.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 288.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 285.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 278.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 269.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 268.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 268.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 254.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 253.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1152.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1152.9
FF:10158-103A5 76 years, female 1152.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 759.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 748.8
Samples: 4

Max nTPM: 859.2
Min nTPM: 505.3
Sample A Female 847.4
Sample B Female 505.3
Sample C Male 783.3
Sample D Male 859.2
Midbrain
nTPM: 759.3
Samples: 4

Max nTPM: 1105.7
Min nTPM: 589.7
Sample A Female 1105.7
Sample B Female 667.2
Sample C Male 674.7
Sample D Male 589.7
Periaqueductal gray
nTPM: 589.8
Samples: 3

Max nTPM: 613.4
Min nTPM: 552.2
Sample B Female 603.7
Sample C Male 613.4
Sample D Male 552.2
Superior colliculi
nTPM: 634.7
Samples: 4

Max nTPM: 746.5
Min nTPM: 367.5
Sample A Female 693.1
Sample B Female 367.5
Sample C Male 731.6
Sample D Male 746.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 60.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.5
Samples: 4

Max nTPM: 62.8
Min nTPM: 58.0
Sample A Male 58.0
Sample B Male 60.5
Sample C Female 62.8
Sample D Female 60.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.5
74510104 Antisense, RP_060208_01_A08, Mouse strain C57BL/6J (56 days, male) 15.5

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