MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.5 nTPM
HPA Brain:41.2 nTPM
GTEx:31.5 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:20.5 nTPM
Mouse:45.4 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.7
1870 Female, age 42, unknown 46.8
1833 Male, age 53, unknown 42.2
1827 Male, age 72, unknown 42.0
2411 Female, age 72, unknown 41.0
1830 Male, age 51, unknown 40.1
2019 Male, age 18, unknown 39.5
2828 Female, age 72, unknown 38.3
2666 Male, age 74, left hemisphere 35.6
2219 Male, age 76, both hemispheres 32.2
2586 Male, age 75, left hemisphere 29.2
Dorsal raphe nucleus
nTPM: 39.7
2750 Male, age 76, both hemispheres 45.0
2016 Female, age 72, unknown 41.8
1828 Male, age 53, unknown 39.5
2047 Male, age 72, unknown 37.0
2298 Female, age 72, unknown 35.0
Inferior colliculus
nTPM: 39.7
2097 Female, age 72, unknown 42.8
1890 Male, age 53, unknown 41.0
1848 Female, age 42, unknown 39.0
2849 Male, age 72, unknown 36.1
Median raphe nucleus
nTPM: 37.0
2220 Male, age 76, midline 37.0
Periaquaductal grey, anterior
nTPM: 37.3
1947 Male, age 18, unknown 42.1
2502 Female, age 75, unknown 37.6
1795 Male, age 51, unknown 32.2
Periaquaductal grey, dorsal
nTPM: 35.8
2464 Female, age 72, unknown 36.6
1831 Male, age 72, unknown 36.4
2850 Male, age 76, both hemispheres 35.8
1840 Male, age 53, unknown 34.3
Periaquaductal grey, lateral
nTPM: 36.4
2053 Male, age 18, unknown 38.3
2140 Male, age 76, both hemispheres 36.9
2272 Male, age 74, both hemispheres 34.0
Pretectal area
nTPM: 36.4
2667 Female, age 75, unknown 40.6
2273 Male, age 74, both hemispheres 38.6
2224 Female, age 72, unknown 38.4
2316 Male, age 76, right hemisphere 37.5
2825 Male, age 18, unknown 36.5
1817 Female, age 42, unknown 36.0
2407 Male, age 75, both hemispheres 35.8
1944 Female, age 72, unknown 35.5
1815 Male, age 53, unknown 34.8
1816 Male, age 51, unknown 33.5
2007 Male, age 72, unknown 33.4
Red nucleus
nTPM: 41.2
1954 Female, age 42, unknown 46.8
2823 Male, age 76, right hemisphere 46.0
1865 Male, age 51, unknown 45.6
1821 Female, age 72, unknown 44.1
1904 Male, age 53, unknown 42.4
2769 Male, age 72, unknown 41.9
2227 Male, age 72, unknown 41.1
2725 Female, age 75, unknown 39.5
2503 Female, age 72, unknown 39.3
2584 Male, age 75, left hemisphere 37.8
2588 Male, age 74, left hemisphere 35.7
2785 Male, age 18, unknown 34.3
Substantia nigra
nTPM: 36.9
2241 Male, age 72, unknown 41.2
1889 Female, age 72, unknown 38.9
1851 Male, age 51, unknown 37.5
1916 Female, age 42, unknown 37.4
2590 Female, age 75, unknown 37.3
2409 Female, age 72, unknown 36.7
2699 Male, age 18, unknown 36.7
2583 Male, age 75, right hemisphere 36.2
1941 Male, age 53, unknown 34.6
2665 Male, age 74, both hemispheres 33.0
Superior colliculus
nTPM: 37.3
1895 Male, age 76, right hemisphere 41.2
1839 Male, age 51, unknown 40.9
2587 Male, age 74, left hemisphere 39.1
1913 Female, age 42, unknown 39.0
1995 Male, age 72, unknown 37.2
2261 Male, age 18, unknown 36.2
2087 Female, age 72, unknown 36.0
1796 Male, age 53, unknown 35.2
2664 Male, age 75, both hemispheres 34.5
2668 Female, age 75, unknown 33.8
Ventral tegmental area
nTPM: 36.5
2223 Female, age 72, unknown 40.1
2021 Male, age 53, unknown 38.0
2218 Male, age 76, both hemispheres 36.1
1915 Female, age 42, unknown 35.3
1942 Male, age 51, unknown 35.1
2410 Female, age 72, unknown 34.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.5
Samples: 139

Max nTPM: 51.5
Min nTPM: 17.2
Std nTPM: 6.5
Median nTPM: 30.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 51.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 50.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 50.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 48.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 47.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 46.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 45.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 43.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 43.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 43.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 40.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.4
FF:10158-103A5 76 years, female 41.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.6
Samples: 4

Max nTPM: 22.6
Min nTPM: 10.1
Sample A Female 22.6
Sample B Female 18.0
Sample C Male 10.1
Sample D Male 11.8
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 39.5
Min nTPM: 9.9
Sample A Female 39.5
Sample B Female 19.7
Sample C Male 13.1
Sample D Male 9.9
Periaqueductal gray
nTPM: 12.3
Samples: 3

Max nTPM: 17.6
Min nTPM: 9.5
Sample B Female 17.6
Sample C Male 9.9
Sample D Male 9.5
Superior colliculi
nTPM: 16.2
Samples: 4

Max nTPM: 22.7
Min nTPM: 10.2
Sample A Female 22.7
Sample B Female 19.3
Sample C Male 12.7
Sample D Male 10.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 45.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.4
Samples: 4

Max nTPM: 46.6
Min nTPM: 44.5
Sample A Male 45.7
Sample B Male 44.5
Sample C Female 46.6
Sample D Female 44.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69838747 Antisense, RP_050321_03_H07, Mouse strain C57BL/6J (56 days, male) 0.9

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