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ECHDC1
HPA
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  • ECHDC1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ECHDC1
Synonyms dJ351K20.2
Gene descriptioni

Full gene name according to HGNC.

Ethylmalonyl-CoA decarboxylase 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 6
Cytoband q22.33
Chromosome location (bp) 127288712 - 127343609
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

14
Ensembl ENSG00000093144 (version 109)
Entrez gene 55862
HGNC HGNC:21489
UniProt Q9NTX5 (UniProt - Evidence at protein level)
neXtProt NX_Q9NTX5
GeneCards ECHDC1
Antibodypedia ECHDC1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Decarboxylates ethylmalonyl-CoA, a potentially toxic metabolite, to form butyryl-CoA, suggesting it might be involved in metabolite proofreading 1. Acts preferentially on (S)- ethylmalonyl-CoA but has also some activity on the (R)-isomer (By similarity). Also has methylmalonyl-CoA decarboxylase activity at lower level (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Lyase
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable carboxy-lyase activity and enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be integral component of membrane. Predicted to be active in cytosol. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ECHDC1-202
ENSP00000357272
ENST00000368289
Q9NTX5
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
Enzymes
   ENZYME proteins
   Lyases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0004492 [methylmalonyl-CoA decarboxylase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006635 [fatty acid beta-oxidation]
GO:0016829 [lyase activity]
GO:0016831 [carboxy-lyase activity]
Show all
145 aa
15.9 kDa
No 0
ECHDC1-203
ENSP00000357274
ENST00000368291
Q9NTX5
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
Enzymes
   ENZYME proteins
   Lyases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0004492 [methylmalonyl-CoA decarboxylase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006635 [fatty acid beta-oxidation]
GO:0016829 [lyase activity]
GO:0016831 [carboxy-lyase activity]
Show all
145 aa
15.9 kDa
No 0
ECHDC1-207
ENSP00000402492
ENST00000430841
Q9NTX5
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
Enzymes
   ENZYME proteins
   Lyases
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0004492 [methylmalonyl-CoA decarboxylase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006635 [fatty acid beta-oxidation]
GO:0016829 [lyase activity]
GO:0016831 [carboxy-lyase activity]
Show all
301 aa
33 kDa
No 0
ECHDC1-208
ENSP00000399233
ENST00000436638
H0Y5L2
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
   MEMSAT-SVM predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
Show all
341 aa
37.8 kDa
No 0
ECHDC1-209
ENSP00000404866
ENST00000454591
Q9NTX5
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
Enzymes
   ENZYME proteins
   Lyases
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0004492 [methylmalonyl-CoA decarboxylase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006635 [fatty acid beta-oxidation]
GO:0016829 [lyase activity]
GO:0016831 [carboxy-lyase activity]
Show all
226 aa
24.9 kDa
No 0
ECHDC1-210
ENSP00000401751
ENST00000454859
Q9NTX5
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
Enzymes
   ENZYME proteins
   Lyases
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0004492 [methylmalonyl-CoA decarboxylase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006635 [fatty acid beta-oxidation]
GO:0016829 [lyase activity]
GO:0016831 [carboxy-lyase activity]
Show all
301 aa
33 kDa
No 0
ECHDC1-211
ENSP00000432265
ENST00000460558
H0YCS9
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0016020 [membrane]
Show all
100 aa
10.7 kDa
No 0
ECHDC1-212
ENSP00000433015
ENST00000461239
H0YD54
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
   Secreted proteins predicted by MDSEC
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
Show all
34 aa
3.6 kDa
Yes 0
ECHDC1-214
ENSP00000434908
ENST00000474289
Q9NTX5
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
Enzymes
   ENZYME proteins
   Lyases
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0004492 [methylmalonyl-CoA decarboxylase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006635 [fatty acid beta-oxidation]
GO:0016829 [lyase activity]
GO:0016831 [carboxy-lyase activity]
Show all
301 aa
33 kDa
No 0
ECHDC1-218
ENSP00000435068
ENST00000525745
E9PLY6
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
Show all
179 aa
19.9 kDa
No 0
ECHDC1-220
ENSP00000436109
ENST00000528402
Q9NTX5
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
Enzymes
   ENZYME proteins
   Lyases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0004492 [methylmalonyl-CoA decarboxylase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006635 [fatty acid beta-oxidation]
GO:0016829 [lyase activity]
GO:0016831 [carboxy-lyase activity]
Show all
70 aa
7.7 kDa
No 0
ECHDC1-221
ENSP00000434143
ENST00000531582
E9PRU6
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
Show all
135 aa
14.7 kDa
No 0
ECHDC1-222
ENSP00000436585
ENST00000531967
Q9NTX5
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
Enzymes
   ENZYME proteins
   Lyases
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0004492 [methylmalonyl-CoA decarboxylase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006635 [fatty acid beta-oxidation]
GO:0016829 [lyase activity]
GO:0016831 [carboxy-lyase activity]
Show all
307 aa
33.7 kDa
No 0
ECHDC1-223
ENSP00000435502
ENST00000534442
E9PJS8
[Direct mapping] Ethylmalonyl-CoA decarboxylase
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
Show all
151 aa
16.6 kDa
No 0

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