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HDAC6
HPA
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  • HDAC6
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

HDAC6
Synonyms FLJ16239, HD6, JM21, KIAA0901, PPP1R90
Gene descriptioni

Full gene name according to HGNC.

Histone deacetylase 6
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
FDA approved drug targets
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome X
Cytoband p11.23
Chromosome location (bp) 48801377 - 48824982
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

26
Ensembl ENSG00000094631 (version 109)
Entrez gene 10013
HGNC HGNC:14064
UniProt Q9UBN7 (UniProt - Evidence at protein level)
neXtProt NX_Q9UBN7
GeneCards HDAC6
Antibodypedia HDAC6 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4) 1. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events 2. Histone deacetylases act via the formation of large multiprotein complexes 3. In addition to histones, deacetylates other proteins, such as CTTN, tubulin and SQSTM1 4, 5, 6, 7, 8. Plays a central role in microtubule-dependent cell motility by mediating deacetylation of tubulin 9, 10, 11. Required for cilia disassembly; via deacetylation of alpha-tubulin 12, 13. Promotes deacetylation of CTTN, leading to actin polymerization, promotion of autophagosome-lysosome fusion and completion of autophagy 14. Involved in the MTA1-mediated epigenetic regulation of ESR1 expression in breast cancer 15. Promotes odontoblast differentiation following IPO7-mediated nuclear import and subsequent repression of RUNX2 expression (By similarity). In addition to its protein deacetylase activity, plays a key role in the degradation of misfolded proteins: when misfolded proteins are too abundant to be degraded by the chaperone refolding system and the ubiquitin-proteasome, mediates the transport of misfolded proteins to a cytoplasmic juxtanuclear structure called aggresome 16. Probably acts as an adapter that recognizes polyubiquitinated misfolded proteins and target them to the aggresome, facilitating their clearance by autophagy 17.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Actin-binding, Chromatin regulator, Hydrolase, Repressor
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Autophagy, Transcription, Transcription regulation
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

Histones play a critical role in transcriptional regulation, cell cycle progression, and developmental events. Histone acetylation/deacetylation alters chromosome structure and affects transcription factor access to DNA. The protein encoded by this gene belongs to class II of the histone deacetylase/acuc/apha family. It contains an internal duplication of two catalytic domains which appear to function independently of each other. This protein possesses histone deacetylase activity and represses transcription. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
HDAC6-201
ENSP00000334061
ENST00000334136
Q9UBN7
[Direct mapping] Histone deacetylase 6
Show all
A0A024QZ26
[Target identity:100%; Query identity:100%] Histone deacetylase 6, isoform CRA_c
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Congenital malformations
   Other congenital malformations
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000209 [protein polyubiquitination]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0001222 [transcription corepressor binding]
GO:0001932 [regulation of protein phosphorylation]
GO:0001975 [response to amphetamine]
GO:0003779 [actin binding]
GO:0004407 [histone deacetylase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005771 [multivesicular body]
GO:0005813 [centrosome]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005874 [microtubule]
GO:0005875 [microtubule associated complex]
GO:0005901 [caveola]
GO:0005929 [cilium]
GO:0006325 [chromatin organization]
GO:0006476 [protein deacetylation]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0006515 [protein quality control for misfolded or incompletely synthesized proteins]
GO:0006886 [intracellular protein transport]
GO:0006914 [autophagy]
GO:0007026 [negative regulation of microtubule depolymerization]
GO:0008013 [beta-catenin binding]
GO:0008017 [microtubule binding]
GO:0008270 [zinc ion binding]
GO:0010506 [regulation of autophagy]
GO:0010634 [positive regulation of epithelial cell migration]
GO:0010727 [negative regulation of hydrogen peroxide metabolic process]
GO:0010821 [regulation of mitochondrion organization]
GO:0010977 [negative regulation of neuron projection development]
GO:0015630 [microtubule cytoskeleton]
GO:0016234 [inclusion body]
GO:0016235 [aggresome]
GO:0016241 [regulation of macroautophagy]
GO:0016575 [histone deacetylation]
GO:0016787 [hydrolase activity]
GO:0019213 [deacetylase activity]
GO:0019896 [axonal transport of mitochondrion]
GO:0019899 [enzyme binding]
GO:0030182 [neuron differentiation]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0031252 [cell leading edge]
GO:0031333 [negative regulation of protein-containing complex assembly]
GO:0031593 [polyubiquitin modification-dependent protein binding]
GO:0031625 [ubiquitin protein ligase binding]
GO:0031647 [regulation of protein stability]
GO:0031648 [protein destabilization]
GO:0032418 [lysosome localization]
GO:0032984 [protein-containing complex disassembly]
GO:0032991 [protein-containing complex]
GO:0033138 [positive regulation of peptidyl-serine phosphorylation]
GO:0033558 [protein lysine deacetylase activity]
GO:0034599 [cellular response to oxidative stress]
GO:0034983 [peptidyl-lysine deacetylation]
GO:0035902 [response to immobilization stress]
GO:0035967 [cellular response to topologically incorrect protein]
GO:0036064 [ciliary basal body]
GO:0040029 [epigenetic regulation of gene expression]
GO:0042826 [histone deacetylase binding]
GO:0042903 [tubulin deacetylase activity]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0043014 [alpha-tubulin binding]
GO:0043025 [neuronal cell body]
GO:0043130 [ubiquitin binding]
GO:0043162 [ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway]
GO:0043204 [perikaryon]
GO:0043242 [negative regulation of protein-containing complex disassembly]
GO:0045598 [regulation of fat cell differentiation]
GO:0045861 [negative regulation of proteolysis]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
GO:0048156 [tau protein binding]
GO:0048471 [perinuclear region of cytoplasm]
GO:0048487 [beta-tubulin binding]
GO:0048668 [collateral sprouting]
GO:0048843 [negative regulation of axon extension involved in axon guidance]
GO:0050775 [positive regulation of dendrite morphogenesis]
GO:0051354 [negative regulation of oxidoreductase activity]
GO:0051412 [response to corticosterone]
GO:0051646 [mitochondrion localization]
GO:0051787 [misfolded protein binding]
GO:0051788 [response to misfolded protein]
GO:0051879 [Hsp90 protein binding]
GO:0051968 [positive regulation of synaptic transmission, glutamatergic]
GO:0060271 [cilium assembly]
GO:0060632 [regulation of microtubule-based movement]
GO:0060765 [regulation of androgen receptor signaling pathway]
GO:0060997 [dendritic spine morphogenesis]
GO:0061523 [cilium disassembly]
GO:0061734 [parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization]
GO:0070201 [regulation of establishment of protein localization]
GO:0070301 [cellular response to hydrogen peroxide]
GO:0070507 [regulation of microtubule cytoskeleton organization]
GO:0070840 [dynein complex binding]
GO:0070842 [aggresome assembly]
GO:0070845 [polyubiquitinated misfolded protein transport]
GO:0070846 [Hsp90 deacetylation]
GO:0070848 [response to growth factor]
GO:0071218 [cellular response to misfolded protein]
GO:0071374 [cellular response to parathyroid hormone stimulus]
GO:0071548 [response to dexamethasone]
GO:0090042 [tubulin deacetylation]
GO:0090044 [positive regulation of tubulin deacetylation]
GO:0098779 [positive regulation of mitophagy in response to mitochondrial depolarization]
GO:1901300 [positive regulation of hydrogen peroxide-mediated programmed cell death]
GO:1901984 [negative regulation of protein acetylation]
GO:1903146 [regulation of autophagy of mitochondrion]
GO:1903223 [positive regulation of oxidative stress-induced neuron death]
GO:1904056 [positive regulation of cholangiocyte proliferation]
GO:1904115 [axon cytoplasm]
GO:2000273 [positive regulation of signaling receptor activity]
Show all
1215 aa
131.4 kDa
No 0
HDAC6-202
ENSP00000365795
ENST00000376610
A6NDI8
[Direct mapping] Histone deacetylase 6
A0A024QZ26
[Target identity:100%; Query identity:100%] Histone deacetylase 6, isoform CRA_c
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0005654 [nucleoplasm]
GO:0006325 [chromatin organization]
GO:0008270 [zinc ion binding]
GO:0016575 [histone deacetylation]
GO:0033558 [protein lysine deacetylase activity]
GO:1904115 [axon cytoplasm]
Show all
1215 aa
131.4 kDa
No 0
HDAC6-203
ENSP00000365804
ENST00000376619
Q9UBN7
[Direct mapping] Histone deacetylase 6
Show all
A0A024QZ26
[Target identity:100%; Query identity:100%] Histone deacetylase 6, isoform CRA_c
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Congenital malformations
   Other congenital malformations
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0001222 [transcription corepressor binding]
GO:0003779 [actin binding]
GO:0004407 [histone deacetylase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005771 [multivesicular body]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005874 [microtubule]
GO:0005875 [microtubule associated complex]
GO:0005901 [caveola]
GO:0005929 [cilium]
GO:0006325 [chromatin organization]
GO:0006476 [protein deacetylation]
GO:0006515 [protein quality control for misfolded or incompletely synthesized proteins]
GO:0006886 [intracellular protein transport]
GO:0006914 [autophagy]
GO:0008013 [beta-catenin binding]
GO:0008017 [microtubule binding]
GO:0008270 [zinc ion binding]
GO:0010506 [regulation of autophagy]
GO:0010634 [positive regulation of epithelial cell migration]
GO:0010727 [negative regulation of hydrogen peroxide metabolic process]
GO:0016234 [inclusion body]
GO:0016235 [aggresome]
GO:0016241 [regulation of macroautophagy]
GO:0016575 [histone deacetylation]
GO:0016787 [hydrolase activity]
GO:0019896 [axonal transport of mitochondrion]
GO:0019899 [enzyme binding]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0031252 [cell leading edge]
GO:0031333 [negative regulation of protein-containing complex assembly]
GO:0031593 [polyubiquitin modification-dependent protein binding]
GO:0031625 [ubiquitin protein ligase binding]
GO:0031647 [regulation of protein stability]
GO:0032418 [lysosome localization]
GO:0033138 [positive regulation of peptidyl-serine phosphorylation]
GO:0033558 [protein lysine deacetylase activity]
GO:0034983 [peptidyl-lysine deacetylation]
GO:0035967 [cellular response to topologically incorrect protein]
GO:0036064 [ciliary basal body]
GO:0040029 [epigenetic regulation of gene expression]
GO:0042826 [histone deacetylase binding]
GO:0042903 [tubulin deacetylase activity]
GO:0042995 [cell projection]
GO:0043014 [alpha-tubulin binding]
GO:0043204 [perikaryon]
GO:0043242 [negative regulation of protein-containing complex disassembly]
GO:0045861 [negative regulation of proteolysis]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
GO:0048156 [tau protein binding]
GO:0048471 [perinuclear region of cytoplasm]
GO:0051354 [negative regulation of oxidoreductase activity]
GO:0051787 [misfolded protein binding]
GO:0051788 [response to misfolded protein]
GO:0051879 [Hsp90 protein binding]
GO:0060271 [cilium assembly]
GO:0060632 [regulation of microtubule-based movement]
GO:0060765 [regulation of androgen receptor signaling pathway]
GO:0061523 [cilium disassembly]
GO:0061734 [parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization]
GO:0070301 [cellular response to hydrogen peroxide]
GO:0070840 [dynein complex binding]
GO:0070842 [aggresome assembly]
GO:0070845 [polyubiquitinated misfolded protein transport]
GO:0070848 [response to growth factor]
GO:0090042 [tubulin deacetylation]
GO:1901300 [positive regulation of hydrogen peroxide-mediated programmed cell death]
GO:1903146 [regulation of autophagy of mitochondrion]
GO:1904115 [axon cytoplasm]
GO:2000273 [positive regulation of signaling receptor activity]
Show all
1215 aa
131.4 kDa
No 0
HDAC6-204
ENSP00000365831
ENST00000376643
A6NDI8
[Direct mapping] Histone deacetylase 6
A0A024QZ26
[Target identity:100%; Query identity:100%] Histone deacetylase 6, isoform CRA_c
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0005654 [nucleoplasm]
GO:0006325 [chromatin organization]
GO:0008270 [zinc ion binding]
GO:0016575 [histone deacetylation]
GO:0033558 [protein lysine deacetylase activity]
GO:1904115 [axon cytoplasm]
Show all
1215 aa
131.4 kDa
No 0
HDAC6-205
ENSP00000392815
ENST00000423941
C9J172
[Direct mapping] Histone deacetylase 6
A0A024QZ26
[Target identity:100%; Query identity:100%] Histone deacetylase 6, isoform CRA_c
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0005654 [nucleoplasm]
GO:0006325 [chromatin organization]
GO:0008270 [zinc ion binding]
GO:0016575 [histone deacetylation]
GO:0033558 [protein lysine deacetylase activity]
GO:1904115 [axon cytoplasm]
Show all
1215 aa
131.4 kDa
No 0
HDAC6-207
ENSP00000403370
ENST00000438518
C9JEF4
[Direct mapping] Histone deacetylase 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
146 aa
16.4 kDa
No 0
HDAC6-208
ENSP00000394377
ENST00000440653
E7ER52
[Direct mapping] Histone deacetylase 6
A0A024QZ26
[Target identity:100%; Query identity:100%] Histone deacetylase 6, isoform CRA_c
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0005654 [nucleoplasm]
GO:0006325 [chromatin organization]
GO:0008270 [zinc ion binding]
GO:0016575 [histone deacetylation]
GO:0033558 [protein lysine deacetylase activity]
GO:1904115 [axon cytoplasm]
Show all
1215 aa
131.4 kDa
No 0
HDAC6-209
ENSP00000393916
ENST00000441703
Q9BRX7
[Direct mapping] HDAC6 protein; Histone deacetylase 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0006325 [chromatin organization]
GO:0016575 [histone deacetylation]
Show all
146 aa
16.4 kDa
No 0
HDAC6-210
ENSP00000402751
ENST00000443563
E7EP63
[Direct mapping] Histone deacetylase 6
A0A024QZ26
[Target identity:100%; Query identity:100%] Histone deacetylase 6, isoform CRA_c
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0005654 [nucleoplasm]
GO:0006325 [chromatin organization]
GO:0008270 [zinc ion binding]
GO:0016575 [histone deacetylation]
GO:0033558 [protein lysine deacetylase activity]
GO:1904115 [axon cytoplasm]
Show all
1215 aa
131.4 kDa
No 0
HDAC6-211
ENSP00000496032
ENST00000461608
A0A2R8Y758
[Direct mapping] Histone deacetylase 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
211 aa
23.5 kDa
No 0
HDAC6-212
ENSP00000496727
ENST00000462730
Q9BRX7
[Direct mapping] HDAC6 protein; Histone deacetylase 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0006325 [chromatin organization]
GO:0016575 [histone deacetylation]
Show all
146 aa
16.4 kDa
No 0
HDAC6-213
ENSP00000494447
ENST00000465269
Q9BRX7
[Direct mapping] HDAC6 protein; Histone deacetylase 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0006325 [chromatin organization]
GO:0016575 [histone deacetylation]
Show all
146 aa
16.4 kDa
No 0
HDAC6-215
ENSP00000513127
ENST00000469223
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008270 [zinc ion binding]
Show all
1160 aa
125.4 kDa
No 0
HDAC6-217
ENSP00000495151
ENST00000476625
A0A2R8Y5Z4
[Direct mapping] Histone deacetylase 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0006325 [chromatin organization]
GO:0016575 [histone deacetylation]
Show all
91 aa
10.4 kDa
No 0
HDAC6-219
ENSP00000513130
ENST00000477561
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008270 [zinc ion binding]
Show all
1160 aa
125.4 kDa
No 0
HDAC6-228
ENSP00000496207
ENST00000489352
A0A2R8Y5Z4
[Direct mapping] Histone deacetylase 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0006325 [chromatin organization]
GO:0016575 [histone deacetylation]
Show all
91 aa
10.4 kDa
No 0
HDAC6-232
ENSP00000494293
ENST00000642405
A0A2R8Y559
[Direct mapping] Histone deacetylase 6
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0006325 [chromatin organization]
GO:0008270 [zinc ion binding]
GO:0016575 [histone deacetylation]
GO:0033558 [protein lysine deacetylase activity]
Show all
1192 aa
128.7 kDa
No 0
HDAC6-233
ENSP00000496046
ENST00000643374
Q9UBN7
[Direct mapping] Histone deacetylase 6
Show all
A0A024QZ26
[Target identity:100%; Query identity:100%] Histone deacetylase 6, isoform CRA_c
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Congenital malformations
   Other congenital malformations
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0001222 [transcription corepressor binding]
GO:0003779 [actin binding]
GO:0004407 [histone deacetylase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005771 [multivesicular body]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005874 [microtubule]
GO:0005875 [microtubule associated complex]
GO:0005901 [caveola]
GO:0005929 [cilium]
GO:0006325 [chromatin organization]
GO:0006476 [protein deacetylation]
GO:0006515 [protein quality control for misfolded or incompletely synthesized proteins]
GO:0006886 [intracellular protein transport]
GO:0006914 [autophagy]
GO:0008013 [beta-catenin binding]
GO:0008017 [microtubule binding]
GO:0008270 [zinc ion binding]
GO:0010506 [regulation of autophagy]
GO:0010634 [positive regulation of epithelial cell migration]
GO:0010727 [negative regulation of hydrogen peroxide metabolic process]
GO:0016234 [inclusion body]
GO:0016235 [aggresome]
GO:0016241 [regulation of macroautophagy]
GO:0016575 [histone deacetylation]
GO:0016787 [hydrolase activity]
GO:0019896 [axonal transport of mitochondrion]
GO:0019899 [enzyme binding]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0031252 [cell leading edge]
GO:0031333 [negative regulation of protein-containing complex assembly]
GO:0031593 [polyubiquitin modification-dependent protein binding]
GO:0031625 [ubiquitin protein ligase binding]
GO:0031647 [regulation of protein stability]
GO:0032418 [lysosome localization]
GO:0033138 [positive regulation of peptidyl-serine phosphorylation]
GO:0033558 [protein lysine deacetylase activity]
GO:0034983 [peptidyl-lysine deacetylation]
GO:0035967 [cellular response to topologically incorrect protein]
GO:0036064 [ciliary basal body]
GO:0040029 [epigenetic regulation of gene expression]
GO:0042826 [histone deacetylase binding]
GO:0042903 [tubulin deacetylase activity]
GO:0042995 [cell projection]
GO:0043014 [alpha-tubulin binding]
GO:0043204 [perikaryon]
GO:0043242 [negative regulation of protein-containing complex disassembly]
GO:0045861 [negative regulation of proteolysis]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
GO:0048156 [tau protein binding]
GO:0048471 [perinuclear region of cytoplasm]
GO:0051354 [negative regulation of oxidoreductase activity]
GO:0051787 [misfolded protein binding]
GO:0051788 [response to misfolded protein]
GO:0051879 [Hsp90 protein binding]
GO:0060271 [cilium assembly]
GO:0060632 [regulation of microtubule-based movement]
GO:0060765 [regulation of androgen receptor signaling pathway]
GO:0061523 [cilium disassembly]
GO:0061734 [parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization]
GO:0070301 [cellular response to hydrogen peroxide]
GO:0070840 [dynein complex binding]
GO:0070842 [aggresome assembly]
GO:0070845 [polyubiquitinated misfolded protein transport]
GO:0070848 [response to growth factor]
GO:0090042 [tubulin deacetylation]
GO:1901300 [positive regulation of hydrogen peroxide-mediated programmed cell death]
GO:1903146 [regulation of autophagy of mitochondrion]
GO:1904115 [axon cytoplasm]
GO:2000273 [positive regulation of signaling receptor activity]
Show all
1215 aa
131.4 kDa
No 0
HDAC6-235
ENSP00000494503
ENST00000643934
A0A2R8YDE6
[Direct mapping] Histone deacetylase 6
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0005654 [nucleoplasm]
GO:0006325 [chromatin organization]
GO:0008270 [zinc ion binding]
GO:0016575 [histone deacetylation]
GO:0033558 [protein lysine deacetylase activity]
Show all
1160 aa
125.4 kDa
No 0
HDAC6-236
ENSP00000496013
ENST00000644068
Q9UBN7
[Direct mapping] Histone deacetylase 6
Show all
A0A024QZ26
[Target identity:100%; Query identity:100%] Histone deacetylase 6, isoform CRA_c
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Congenital malformations
   Other congenital malformations
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0001222 [transcription corepressor binding]
GO:0003779 [actin binding]
GO:0004407 [histone deacetylase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005771 [multivesicular body]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005874 [microtubule]
GO:0005875 [microtubule associated complex]
GO:0005901 [caveola]
GO:0005929 [cilium]
GO:0006325 [chromatin organization]
GO:0006476 [protein deacetylation]
GO:0006515 [protein quality control for misfolded or incompletely synthesized proteins]
GO:0006886 [intracellular protein transport]
GO:0006914 [autophagy]
GO:0008013 [beta-catenin binding]
GO:0008017 [microtubule binding]
GO:0008270 [zinc ion binding]
GO:0010506 [regulation of autophagy]
GO:0010634 [positive regulation of epithelial cell migration]
GO:0010727 [negative regulation of hydrogen peroxide metabolic process]
GO:0016234 [inclusion body]
GO:0016235 [aggresome]
GO:0016241 [regulation of macroautophagy]
GO:0016575 [histone deacetylation]
GO:0016787 [hydrolase activity]
GO:0019896 [axonal transport of mitochondrion]
GO:0019899 [enzyme binding]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0031252 [cell leading edge]
GO:0031333 [negative regulation of protein-containing complex assembly]
GO:0031593 [polyubiquitin modification-dependent protein binding]
GO:0031625 [ubiquitin protein ligase binding]
GO:0031647 [regulation of protein stability]
GO:0032418 [lysosome localization]
GO:0033138 [positive regulation of peptidyl-serine phosphorylation]
GO:0033558 [protein lysine deacetylase activity]
GO:0034983 [peptidyl-lysine deacetylation]
GO:0035967 [cellular response to topologically incorrect protein]
GO:0036064 [ciliary basal body]
GO:0040029 [epigenetic regulation of gene expression]
GO:0042826 [histone deacetylase binding]
GO:0042903 [tubulin deacetylase activity]
GO:0042995 [cell projection]
GO:0043014 [alpha-tubulin binding]
GO:0043204 [perikaryon]
GO:0043242 [negative regulation of protein-containing complex disassembly]
GO:0045861 [negative regulation of proteolysis]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
GO:0048156 [tau protein binding]
GO:0048471 [perinuclear region of cytoplasm]
GO:0051354 [negative regulation of oxidoreductase activity]
GO:0051787 [misfolded protein binding]
GO:0051788 [response to misfolded protein]
GO:0051879 [Hsp90 protein binding]
GO:0060271 [cilium assembly]
GO:0060632 [regulation of microtubule-based movement]
GO:0060765 [regulation of androgen receptor signaling pathway]
GO:0061523 [cilium disassembly]
GO:0061734 [parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization]
GO:0070301 [cellular response to hydrogen peroxide]
GO:0070840 [dynein complex binding]
GO:0070842 [aggresome assembly]
GO:0070845 [polyubiquitinated misfolded protein transport]
GO:0070848 [response to growth factor]
GO:0090042 [tubulin deacetylation]
GO:1901300 [positive regulation of hydrogen peroxide-mediated programmed cell death]
GO:1903146 [regulation of autophagy of mitochondrion]
GO:1904115 [axon cytoplasm]
GO:2000273 [positive regulation of signaling receptor activity]
Show all
1215 aa
131.4 kDa
No 0
HDAC6-239
ENSP00000493921
ENST00000646703
A0A2R8YCS4
[Direct mapping] Histone deacetylase 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000118 [histone deacetylase complex]
GO:0004407 [histone deacetylase activity]
GO:0006325 [chromatin organization]
GO:0008270 [zinc ion binding]
GO:0016575 [histone deacetylation]
Show all
893 aa
95.5 kDa
No 0
HDAC6-249
ENSP00000513249
ENST00000697320
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008270 [zinc ion binding]
Show all
1160 aa
125.4 kDa
No 0
HDAC6-251
ENSP00000513257
ENST00000697328
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008270 [zinc ion binding]
Show all
1108 aa
119.4 kDa
No 0
HDAC6-255
ENSP00000513273
ENST00000697348
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
146 aa
16.4 kDa
No 0
HDAC6-256
ENSP00000513274
ENST00000697349
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008270 [zinc ion binding]
Show all
1211 aa
131 kDa
No 0
HDAC6-257
ENSP00000513280
ENST00000697368
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Other congenital malformations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008270 [zinc ion binding]
Show all
1166 aa
126.2 kDa
No 0

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