MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.2 nTPM
HPA Brain:351.7 nTPM
GTEx:48.2 nTPM
FANTOM5:203.0 Scaled Tags Per Million
Pig:60.7 nTPM
Mouse:66.1 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 351.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 178.9
2828 Female, age 72, unknown 265.6
2586 Male, age 75, left hemisphere 246.3
2666 Male, age 74, left hemisphere 206.3
1827 Male, age 72, unknown 191.7
1870 Female, age 42, unknown 173.8
1833 Male, age 53, unknown 155.2
1830 Male, age 51, unknown 153.1
2219 Male, age 76, both hemispheres 145.2
2019 Male, age 18, unknown 134.7
2411 Female, age 72, unknown 117.3
Dorsal raphe nucleus
nTPM: 228.5
2016 Female, age 72, unknown 342.7
1828 Male, age 53, unknown 245.8
2047 Male, age 72, unknown 225.0
2298 Female, age 72, unknown 194.4
2750 Male, age 76, both hemispheres 134.5
Inferior colliculus
nTPM: 184.0
2849 Male, age 72, unknown 207.6
1890 Male, age 53, unknown 197.7
1848 Female, age 42, unknown 193.4
2097 Female, age 72, unknown 137.1
Median raphe nucleus
nTPM: 166.9
2220 Male, age 76, midline 166.9
Periaquaductal grey, anterior
nTPM: 226.1
1795 Male, age 51, unknown 293.7
1947 Male, age 18, unknown 201.0
2502 Female, age 75, unknown 183.5
Periaquaductal grey, dorsal
nTPM: 280.4
2850 Male, age 76, both hemispheres 356.3
1831 Male, age 72, unknown 332.3
1840 Male, age 53, unknown 249.5
2464 Female, age 72, unknown 183.5
Periaquaductal grey, lateral
nTPM: 351.7
2053 Male, age 18, unknown 356.4
2140 Male, age 76, both hemispheres 356.3
2272 Male, age 74, both hemispheres 342.4
Pretectal area
nTPM: 240.9
2273 Male, age 74, both hemispheres 444.7
2407 Male, age 75, both hemispheres 337.7
2825 Male, age 18, unknown 249.7
2224 Female, age 72, unknown 242.5
2316 Male, age 76, right hemisphere 234.7
2667 Female, age 75, unknown 227.5
1944 Female, age 72, unknown 213.8
1815 Male, age 53, unknown 204.3
1816 Male, age 51, unknown 202.2
1817 Female, age 42, unknown 168.1
2007 Male, age 72, unknown 124.7
Red nucleus
nTPM: 150.2
2725 Female, age 75, unknown 214.5
2823 Male, age 76, right hemisphere 173.5
1865 Male, age 51, unknown 157.0
2584 Male, age 75, left hemisphere 151.2
1954 Female, age 42, unknown 146.0
2227 Male, age 72, unknown 145.3
2503 Female, age 72, unknown 139.4
1904 Male, age 53, unknown 138.4
2769 Male, age 72, unknown 137.4
1821 Female, age 72, unknown 137.0
2588 Male, age 74, left hemisphere 131.8
2785 Male, age 18, unknown 130.9
Substantia nigra
nTPM: 198.5
2699 Male, age 18, unknown 304.0
2590 Female, age 75, unknown 227.3
2583 Male, age 75, right hemisphere 219.5
1851 Male, age 51, unknown 194.4
1941 Male, age 53, unknown 183.0
2665 Male, age 74, both hemispheres 182.1
1916 Female, age 42, unknown 181.2
2409 Female, age 72, unknown 173.0
2241 Male, age 72, unknown 165.6
1889 Female, age 72, unknown 155.4
Superior colliculus
nTPM: 243.4
1995 Male, age 72, unknown 353.3
2664 Male, age 75, both hemispheres 316.5
1913 Female, age 42, unknown 308.4
2587 Male, age 74, left hemisphere 250.4
2087 Female, age 72, unknown 236.6
1796 Male, age 53, unknown 227.7
2261 Male, age 18, unknown 219.7
1839 Male, age 51, unknown 201.1
2668 Female, age 75, unknown 170.0
1895 Male, age 76, right hemisphere 150.4
Ventral tegmental area
nTPM: 211.3
2021 Male, age 53, unknown 273.1
1915 Female, age 42, unknown 224.0
1942 Male, age 51, unknown 223.2
2223 Female, age 72, unknown 208.8
2218 Male, age 76, both hemispheres 192.9
2410 Female, age 72, unknown 145.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.2
Samples: 139

Max nTPM: 103.1
Min nTPM: 12.4
Std nTPM: 21.5
Median nTPM: 46.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 103.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 100.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 100.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 98.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 97.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 95.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 90.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 88.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 87.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 87.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 85.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 203.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 203.0
FF:10158-103A5 76 years, female 203.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 55.0
Samples: 4

Max nTPM: 71.6
Min nTPM: 46.4
Sample A Female 46.4
Sample B Female 71.6
Sample C Male 48.8
Sample D Male 53.3
Midbrain
nTPM: 60.7
Samples: 4

Max nTPM: 116.7
Min nTPM: 28.8
Sample A Female 116.7
Sample B Female 28.8
Sample C Male 62.0
Sample D Male 35.1
Periaqueductal gray
nTPM: 50.6
Samples: 3

Max nTPM: 58.0
Min nTPM: 41.0
Sample B Female 41.0
Sample C Male 58.0
Sample D Male 52.7
Superior colliculi
nTPM: 57.2
Samples: 4

Max nTPM: 81.2
Min nTPM: 45.0
Sample A Female 45.0
Sample B Female 81.2
Sample C Male 51.7
Sample D Male 50.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 66.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.1
Samples: 4

Max nTPM: 77.2
Min nTPM: 57.1
Sample A Male 57.1
Sample B Male 60.6
Sample C Female 77.2
Sample D Female 69.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69169391 Antisense, RP_050321_03_E01, Mouse strain C57BL/6J (56 days, male) 2.6
74425572 Antisense, RP_051214_02_H12, Mouse strain C57BL/6J (56 days, male) 0.4
71213156 Antisense, RP_050816_03_H12, Mouse strain C57BL/6J (56 days, male) 0.3

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