MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.6 nTPM
HPA Brain:91.3 nTPM
GTEx:54.6 nTPM
FANTOM5:132.9 Scaled Tags Per Million
Pig:96.7 nTPM
Mouse:74.8 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 91.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.2
2586 Male, age 75, left hemisphere 95.2
2219 Male, age 76, both hemispheres 88.9
2828 Female, age 72, unknown 86.8
1833 Male, age 53, unknown 86.2
2666 Male, age 74, left hemisphere 85.5
2019 Male, age 18, unknown 85.4
1830 Male, age 51, unknown 84.1
1827 Male, age 72, unknown 83.7
2411 Female, age 72, unknown 83.1
1870 Female, age 42, unknown 82.7
Dorsal raphe nucleus
nTPM: 80.2
2750 Male, age 76, both hemispheres 87.6
1828 Male, age 53, unknown 82.5
2047 Male, age 72, unknown 77.7
2298 Female, age 72, unknown 77.5
2016 Female, age 72, unknown 75.9
Inferior colliculus
nTPM: 81.4
2849 Male, age 72, unknown 84.0
1890 Male, age 53, unknown 82.6
1848 Female, age 42, unknown 80.9
2097 Female, age 72, unknown 78.2
Median raphe nucleus
nTPM: 89.7
2220 Male, age 76, midline 89.7
Periaquaductal grey, anterior
nTPM: 88.4
2502 Female, age 75, unknown 93.6
1947 Male, age 18, unknown 90.2
1795 Male, age 51, unknown 81.5
Periaquaductal grey, dorsal
nTPM: 80.1
2850 Male, age 76, both hemispheres 83.1
1840 Male, age 53, unknown 81.5
1831 Male, age 72, unknown 79.1
2464 Female, age 72, unknown 76.5
Periaquaductal grey, lateral
nTPM: 78.0
2140 Male, age 76, both hemispheres 82.2
2272 Male, age 74, both hemispheres 77.3
2053 Male, age 18, unknown 74.5
Pretectal area
nTPM: 86.0
2007 Male, age 72, unknown 98.6
1815 Male, age 53, unknown 96.7
1817 Female, age 42, unknown 96.3
1816 Male, age 51, unknown 95.8
1944 Female, age 72, unknown 91.6
2407 Male, age 75, both hemispheres 84.5
2224 Female, age 72, unknown 78.1
2825 Male, age 18, unknown 78.1
2667 Female, age 75, unknown 77.0
2273 Male, age 74, both hemispheres 75.8
2316 Male, age 76, right hemisphere 73.1
Red nucleus
nTPM: 91.3
2503 Female, age 72, unknown 105.0
2588 Male, age 74, left hemisphere 96.2
2584 Male, age 75, left hemisphere 95.8
1821 Female, age 72, unknown 95.5
2725 Female, age 75, unknown 93.2
2785 Male, age 18, unknown 92.9
2769 Male, age 72, unknown 92.0
1865 Male, age 51, unknown 88.7
2227 Male, age 72, unknown 88.0
1904 Male, age 53, unknown 87.4
1954 Female, age 42, unknown 80.8
2823 Male, age 76, right hemisphere 80.2
Substantia nigra
nTPM: 86.3
1916 Female, age 42, unknown 92.7
2665 Male, age 74, both hemispheres 89.6
1889 Female, age 72, unknown 89.5
1851 Male, age 51, unknown 89.0
2409 Female, age 72, unknown 87.5
2699 Male, age 18, unknown 87.5
2241 Male, age 72, unknown 87.2
1941 Male, age 53, unknown 81.7
2590 Female, age 75, unknown 79.7
2583 Male, age 75, right hemisphere 79.1
Superior colliculus
nTPM: 84.8
2668 Female, age 75, unknown 93.7
2261 Male, age 18, unknown 92.3
1913 Female, age 42, unknown 87.8
1839 Male, age 51, unknown 85.7
2587 Male, age 74, left hemisphere 85.5
2664 Male, age 75, both hemispheres 84.2
1796 Male, age 53, unknown 83.7
2087 Female, age 72, unknown 81.3
1995 Male, age 72, unknown 77.2
1895 Male, age 76, right hemisphere 76.5
Ventral tegmental area
nTPM: 85.2
2410 Female, age 72, unknown 92.5
2218 Male, age 76, both hemispheres 89.1
2223 Female, age 72, unknown 87.1
1942 Male, age 51, unknown 82.7
1915 Female, age 42, unknown 81.2
2021 Male, age 53, unknown 78.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 54.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.6
Samples: 139

Max nTPM: 92.3
Min nTPM: 35.2
Std nTPM: 10.4
Median nTPM: 54.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 92.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 84.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 82.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 82.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 75.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 74.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 74.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 73.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 72.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 72.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 71.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 132.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.9
FF:10158-103A5 76 years, female 132.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 96.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84.4
Samples: 4

Max nTPM: 92.1
Min nTPM: 77.0
Sample A Female 88.9
Sample B Female 77.0
Sample C Male 92.1
Sample D Male 79.4
Midbrain
nTPM: 96.7
Samples: 4

Max nTPM: 109.2
Min nTPM: 87.9
Sample A Female 96.7
Sample B Female 87.9
Sample C Male 109.2
Sample D Male 93.0
Periaqueductal gray
nTPM: 82.0
Samples: 3

Max nTPM: 86.1
Min nTPM: 79.3
Sample B Female 80.6
Sample C Male 86.1
Sample D Male 79.3
Superior colliculi
nTPM: 93.2
Samples: 4

Max nTPM: 100.2
Min nTPM: 74.9
Sample A Female 97.4
Sample B Female 74.9
Sample C Male 100.2
Sample D Male 100.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 74.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.8
Samples: 4

Max nTPM: 77.4
Min nTPM: 70.9
Sample A Male 70.9
Sample B Male 76.5
Sample C Female 77.4
Sample D Female 74.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
71281111 Antisense, RP_050818_02_B04, Mouse strain C57BL/6J (56 days, male) 6.4

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