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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:976.3 nTPM
HPA Brain:990.0 nTPM
GTEx:976.3 nTPM
FANTOM5:635.0 Scaled Tags Per Million
Pig:659.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

990.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 849.7
2048 Male, age 55, midline 1003.8
1981 Female, age 72, midline 880.2
2816 Male, age 47, midline 825.1
2565 Male, age 75, midline 780.9
2194 Female, age 79, both hemispheres 758.7
Cervical spinal cord, dorsal horn
nTPM: 944.7
2296 Male, age 66, both hemispheres 1464.9
2173 Female, age 72, unknown 1153.4
2069 Male, age 47, both hemispheres 965.4
1877 Male, age 55, unknown 904.4
2297 Male, age 75, both hemispheres 593.6
2721 Male, age 90, both hemispheres 586.5
Cervical spinal cord, ventral horn
nTPM: 990.0
2068 Male, age 55, unknown 1176.0
2480 Male, age 75, both hemispheres 1036.2
2098 Female, age 72, unknown 1009.0
2809 Male, age 90, both hemispheres 977.6
2295 Male, age 66, both hemispheres 935.9
2820 Female, age 79, both hemispheres 805.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

976.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 976.3
Samples: 159

Max nTPM: 2058.7
Min nTPM: 235.5
Std nTPM: 359.3
Median nTPM: 967.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2058.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1913.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1845.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1797.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1781.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1773.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1772.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1768.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1589.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1515.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1477.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1453.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1445.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1421.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1413.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1386.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1366.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1365.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1358.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1356.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1337.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1327.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1316.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1312.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1306.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1297.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1296.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1289.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1268.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1267.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1266.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1262.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1245.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1240.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1237.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1232.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1230.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1230.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1224.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1223.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1220.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1189.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1183.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1180.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1173.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1160.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1159.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1158.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1154.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1143.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1136.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1133.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1129.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1116.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1108.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1098.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1097.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1090.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1088.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1083.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1082.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1077.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1075.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1073.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1059.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1059.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1058.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1055.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1045.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1044.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1031.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1028.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1008.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1005.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1001.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1000.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 975.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 974.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 970.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 967.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 952.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 947.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 943.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 942.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 939.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 937.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 930.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 929.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 928.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 926.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 923.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 923.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 907.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 906.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 895.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 892.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 888.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 879.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 872.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 866.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 862.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 860.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 848.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 844.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 839.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 819.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 813.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 809.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 791.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 778.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 768.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 757.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 756.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 752.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 748.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 747.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 737.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 736.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 732.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 727.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 717.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 713.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 697.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 693.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 686.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 671.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 670.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 666.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 661.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 660.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 652.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 636.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 617.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 616.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 606.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 594.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 592.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 591.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 577.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 576.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 542.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 497.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 490.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 488.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 486.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 473.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 467.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 465.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 455.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 439.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 407.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 367.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 328.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 326.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 306.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 302.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 253.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 250.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 235.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

635.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 635.0
FF:10181-103D1 60 years, female 755.2
FF:10159-103A6 76 years, female 514.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

659.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 499.3
Samples: 4

Max nTPM: 564.1
Min nTPM: 423.6
Sample A Female 423.6
Sample B Female 533.3
Sample C Male 476.1
Sample D Male 564.1
Ventral spinal cord
nTPM: 659.9
Samples: 4

Max nTPM: 784.2
Min nTPM: 590.2
Sample A Female 631.4
Sample B Female 633.9
Sample C Male 590.2
Sample D Male 784.2

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