MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.1 nTPM
HPA Brain:34.3 nTPM
GTEx:18.1 nTPM
FANTOM5:29.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.7
1827 Male, age 72, unknown 34.6
1870 Female, age 42, unknown 31.2
2666 Male, age 74, left hemisphere 30.5
2219 Male, age 76, both hemispheres 30.1
2828 Female, age 72, unknown 29.6
1830 Male, age 51, unknown 28.1
2411 Female, age 72, unknown 27.8
2019 Male, age 18, unknown 27.4
1833 Male, age 53, unknown 26.9
2586 Male, age 75, left hemisphere 21.0
Dorsal raphe nucleus
nTPM: 28.1
2047 Male, age 72, unknown 30.0
2750 Male, age 76, both hemispheres 29.5
1828 Male, age 53, unknown 28.3
2298 Female, age 72, unknown 27.2
2016 Female, age 72, unknown 25.5
Inferior colliculus
nTPM: 28.0
1848 Female, age 42, unknown 29.8
2097 Female, age 72, unknown 28.5
2849 Male, age 72, unknown 27.6
1890 Male, age 53, unknown 26.2
Median raphe nucleus
nTPM: 34.3
2220 Male, age 76, midline 34.3
Periaquaductal grey, anterior
nTPM: 30.0
1947 Male, age 18, unknown 34.7
1795 Male, age 51, unknown 29.2
2502 Female, age 75, unknown 26.2
Periaquaductal grey, dorsal
nTPM: 25.9
2464 Female, age 72, unknown 27.6
1840 Male, age 53, unknown 25.6
1831 Male, age 72, unknown 25.2
2850 Male, age 76, both hemispheres 25.1
Periaquaductal grey, lateral
nTPM: 25.9
2053 Male, age 18, unknown 27.6
2140 Male, age 76, both hemispheres 25.4
2272 Male, age 74, both hemispheres 24.8
Pretectal area
nTPM: 29.6
1816 Male, age 51, unknown 35.1
2007 Male, age 72, unknown 32.2
1944 Female, age 72, unknown 31.8
1815 Male, age 53, unknown 31.7
1817 Female, age 42, unknown 31.5
2667 Female, age 75, unknown 29.3
2825 Male, age 18, unknown 28.3
2316 Male, age 76, right hemisphere 27.0
2407 Male, age 75, both hemispheres 26.7
2273 Male, age 74, both hemispheres 26.4
2224 Female, age 72, unknown 26.0
Red nucleus
nTPM: 28.9
1821 Female, age 72, unknown 31.5
2503 Female, age 72, unknown 31.4
2725 Female, age 75, unknown 31.4
1954 Female, age 42, unknown 30.6
1865 Male, age 51, unknown 29.5
2588 Male, age 74, left hemisphere 29.1
1904 Male, age 53, unknown 29.0
2823 Male, age 76, right hemisphere 28.5
2769 Male, age 72, unknown 27.0
2227 Male, age 72, unknown 26.5
2584 Male, age 75, left hemisphere 26.1
2785 Male, age 18, unknown 26.1
Substantia nigra
nTPM: 30.8
1916 Female, age 42, unknown 33.9
2409 Female, age 72, unknown 33.7
1941 Male, age 53, unknown 33.2
2590 Female, age 75, unknown 31.6
1889 Female, age 72, unknown 31.3
2241 Male, age 72, unknown 31.3
2665 Male, age 74, both hemispheres 30.1
1851 Male, age 51, unknown 29.8
2583 Male, age 75, right hemisphere 27.9
2699 Male, age 18, unknown 25.5
Superior colliculus
nTPM: 29.3
2261 Male, age 18, unknown 34.0
1895 Male, age 76, right hemisphere 33.6
1796 Male, age 53, unknown 31.9
2587 Male, age 74, left hemisphere 29.9
2668 Female, age 75, unknown 29.8
2087 Female, age 72, unknown 29.7
1913 Female, age 42, unknown 29.3
1839 Male, age 51, unknown 28.3
1995 Male, age 72, unknown 24.3
2664 Male, age 75, both hemispheres 22.6
Ventral tegmental area
nTPM: 28.6
2218 Male, age 76, both hemispheres 31.7
1915 Female, age 42, unknown 30.5
2223 Female, age 72, unknown 29.8
2410 Female, age 72, unknown 28.5
1942 Male, age 51, unknown 25.7
2021 Male, age 53, unknown 25.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.1
Samples: 139

Max nTPM: 32.6
Min nTPM: 12.0
Std nTPM: 3.2
Median nTPM: 17.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 32.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 28.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 27.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 26.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 26.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 24.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 23.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 23.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 22.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 22.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.6
FF:10158-103A5 76 years, female 29.6

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