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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:102.9 nTPM
HPA Brain:99.3 nTPM
GTEx:102.9 nTPM
FANTOM5:174.2 Scaled Tags Per Million
Pig:55.5 nTPM
Mouse:154.0 nTPM
Allen mouse:13.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.3
Sample id Sample description nTPM
Amygdala
nTPM: 99.3
2814 Male, age 76, right hemisphere 122.9
2514 Male, age 75, right hemisphere 106.0
1987 Female, age 91, left hemisphere 97.3
2517 Female, age 94, left hemisphere 92.4
2695 Female, age 67, right hemisphere 78.1
Basal amygdala
nTPM: 91.2
2685 Female, age 94, left hemisphere 103.8
2243 Female, age 91, right hemisphere 103.2
2110 Male, age 80, left hemisphere 101.2
1955 Male, age 76, both hemispheres 92.8
2609 Male, age 75, right hemisphere 87.0
2827 Female, age 67, right hemisphere 59.1
Central amygdala
nTPM: 91.1
1905 Male, age 76, both hemispheres 121.2
2239 Male, age 80, left hemisphere 95.6
2826 Female, age 94, left hemisphere 92.8
2515 Male, age 75, right hemisphere 76.8
2701 Female, age 91, right hemisphere 69.2
Corticomedial amygdala
nTPM: 95.1
2829 Male, age 80, left hemisphere 116.1
2429 Female, age 94, left hemisphere 105.7
2242 Female, age 91, right hemisphere 96.8
2240 Male, age 76, both hemispheres 94.5
2428 Male, age 75, right hemisphere 89.7
2535 Female, age 67, right hemisphere 67.7
Lateral amygdala
nTPM: 87.7
2534 Female, age 94, left hemisphere 120.7
1883 Male, age 76, both hemispheres 105.3
2516 Male, age 75, right hemisphere 92.4
2255 Female, age 91, right hemisphere 74.4
2256 Male, age 80, left hemisphere 73.6
2830 Female, age 67, right hemisphere 59.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 102.9
Samples: 152

Max nTPM: 281.1
Min nTPM: 57.5
Std nTPM: 32.8
Median nTPM: 95.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 281.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 225.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 216.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 211.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 175.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 173.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 166.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 157.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 156.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 156.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 149.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 149.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 148.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 147.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 144.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 143.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 143.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 142.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 140.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 140.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 138.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 137.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 135.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 128.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 124.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 124.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 121.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 121.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 120.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 120.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 119.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 119.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 116.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 116.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 115.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 114.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 113.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 112.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 111.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 111.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 110.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 109.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 109.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 109.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 108.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 108.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 108.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 108.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 107.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 107.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 105.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 105.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 104.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 104.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 103.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 103.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 101.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 101.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 101.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 101.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 101.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 100.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 100.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 100.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 99.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 99.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 98.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 98.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 98.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 97.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 97.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 96.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 96.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 95.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 95.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 95.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 94.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 94.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 94.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 94.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 94.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 93.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 93.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 93.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 93.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 92.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 92.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 92.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 92.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 92.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 91.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 90.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 90.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 89.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 89.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 89.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 89.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 88.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 87.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 87.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 86.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 86.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 86.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 86.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 85.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 85.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 85.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 84.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 84.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 84.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 84.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 83.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 83.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 82.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 82.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 82.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 80.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 80.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 79.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 79.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 78.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 78.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 77.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 77.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 77.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 77.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 76.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 76.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 75.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 75.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 75.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 74.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 74.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 73.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 73.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 72.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 71.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 71.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 70.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 69.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 69.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 69.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 69.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 68.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 67.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 67.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 66.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 65.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 62.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 60.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 57.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

174.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 174.2
FF:10151-102I7 76 years, female 174.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.5
Pig sample Sample description nTPM
Amygdala
nTPM: 55.5
Samples: 4

Max nTPM: 76.0
Min nTPM: 46.5
Sample A Female 76.0
Sample B Female 47.2
Sample C Male 46.5
Sample D Male 52.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 154.0
Samples: 4

Max nTPM: 159.9
Min nTPM: 149.6
Sample A Male 149.6
Sample B Male 159.9
Sample C Female 153.9
Sample D Female 152.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.5
393265 Antisense, RP_040809_01_B07, Mouse strain C57BL/6J (56 days, male) 13.5

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