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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:271.7 nTPM
HPA Brain:200.1 nTPM
GTEx:271.7 nTPM
FANTOM5:276.3 Scaled Tags Per Million
Pig:217.5 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 194.8
2194 Female, age 79, both hemispheres 202.4
2816 Male, age 47, midline 202.4
2565 Male, age 75, midline 199.8
1981 Female, age 72, midline 192.2
2048 Male, age 55, midline 177.4
Cervical spinal cord, dorsal horn
nTPM: 182.0
1877 Male, age 55, unknown 202.0
2297 Male, age 75, both hemispheres 198.3
2296 Male, age 66, both hemispheres 179.6
2173 Female, age 72, unknown 178.3
2069 Male, age 47, both hemispheres 178.1
2721 Male, age 90, both hemispheres 155.9
Cervical spinal cord, ventral horn
nTPM: 200.1
2480 Male, age 75, both hemispheres 240.0
2295 Male, age 66, both hemispheres 210.0
2809 Male, age 90, both hemispheres 201.7
2068 Male, age 55, unknown 187.6
2820 Female, age 79, both hemispheres 186.0
2098 Female, age 72, unknown 175.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

271.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 271.7
Samples: 159

Max nTPM: 864.8
Min nTPM: 48.0
Std nTPM: 107.6
Median nTPM: 261.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 864.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 630.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 570.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 495.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 476.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 459.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 459.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 451.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 449.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 445.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 436.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 432.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 414.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 407.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 403.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 392.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 384.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 383.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 379.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 370.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 364.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 361.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 360.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 355.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 354.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 352.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 349.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 345.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 344.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 344.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 341.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 339.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 338.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 335.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 333.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 333.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 331.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 329.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 325.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 323.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 315.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 314.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 314.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 313.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 312.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 311.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 309.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 307.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 306.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 305.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 305.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 301.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 300.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 300.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 298.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 298.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 296.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 293.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 291.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 290.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 290.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 289.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 289.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 289.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 287.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 287.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 286.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 286.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 282.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 281.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 278.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 278.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 276.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 276.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 276.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 274.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 274.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 269.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 262.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 261.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 260.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 260.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 260.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 258.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 256.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 255.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 254.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 253.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 252.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 251.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 250.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 248.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 247.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 243.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 243.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 242.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 242.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 242.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 240.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 239.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 239.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 237.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 236.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 235.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 234.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 234.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 233.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 232.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 231.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 230.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 227.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 225.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 225.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 224.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 222.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 216.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 214.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 214.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 210.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 205.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 203.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 199.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 196.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 193.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 192.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 190.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 189.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 187.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 186.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 186.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 181.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 180.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 179.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 176.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 174.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 171.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 169.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 168.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 166.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 156.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 156.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 155.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 154.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 153.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 148.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 146.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 118.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 117.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 115.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 114.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 114.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 104.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 99.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 91.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 90.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 81.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 68.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 68.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 48.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

276.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 276.3
FF:10181-103D1 60 years, female 371.7
FF:10159-103A6 76 years, female 181.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 217.5
Samples: 4

Max nTPM: 238.1
Min nTPM: 200.9
Sample A Female 201.0
Sample B Female 230.0
Sample C Male 238.1
Sample D Male 200.9
Ventral spinal cord
nTPM: 206.9
Samples: 4

Max nTPM: 230.5
Min nTPM: 183.4
Sample A Female 183.4
Sample B Female 230.5
Sample C Male 207.9
Sample D Male 205.8

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