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ATP5F1D
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  • ATP5F1D
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:139.4 nTPM
HPA:46.0 nTPM
GTEx:139.4 nTPM
FANTOM5:581.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002865
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.0
overview
Male, age 65
Small intestine sample 232
nTPM: 58.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 50.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 40.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 35.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 139.4
Samples: 187

Max nTPM: 310.8
Min nTPM: 54.8
Std nTPM: 51.7
Median nTPM: 130.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 310.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 285.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 277.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 272.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 266.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 258.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 258.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 250.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 250.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 249.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 249.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 248.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 239.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 235.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 234.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 222.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 221.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 216.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 216.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 209.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 205.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 202.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 201.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 199.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 199.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 197.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 197.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 194.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 194.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 193.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 191.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 188.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 187.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 187.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 184.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 183.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 182.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 181.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 177.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 175.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 173.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 172.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 170.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 170.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 169.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 166.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 166.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 165.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 164.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 163.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 163.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 162.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 160.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 160.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 160.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 159.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 156.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 156.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 154.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 150.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 149.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 149.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 149.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 147.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 147.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 146.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 145.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 144.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 144.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 143.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 142.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 141.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 140.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 140.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 140.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 139.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 138.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 138.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 137.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 137.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 136.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 136.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 135.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 135.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 134.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 134.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 133.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 133.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 133.1
GTEX-1192X-2526-SM-59868 50-59 years, male 133.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 133.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 132.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 131.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 130.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 130.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 130.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 130.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 129.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 128.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 128.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 127.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 126.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 126.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 125.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 124.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 124.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 123.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 123.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 123.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 122.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 119.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 117.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 116.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 115.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 115.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 115.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 114.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 114.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 114.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 114.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 113.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 112.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 112.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 111.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 110.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 110.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 110.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 110.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 109.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 109.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 108.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 108.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 108.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 107.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 106.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 106.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 106.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 105.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 105.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 103.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 101.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 99.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 98.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 98.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 96.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 95.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 95.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 94.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 94.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 94.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 94.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 92.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 92.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 92.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 91.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 90.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 90.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 89.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 88.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 87.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 85.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 85.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 85.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 85.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 84.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 83.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 83.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 82.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 82.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 80.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 79.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 78.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 77.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 76.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 74.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 74.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 74.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 74.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 72.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 71.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 70.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 69.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 64.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 62.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 62.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 56.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 54.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

581.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 581.7
FF:10024-101D6 15,40,85 years, mixed 581.7

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