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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:138.7 nTPM
FANTOM5:281.3 Scaled Tags Per Million
Pig:153.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA029780Antibody HPA056488
Glial cells Not detectedMedium
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.7
Samples: 246

Max nTPM: 271.6
Min nTPM: 45.6
Std nTPM: 35.9
Median nTPM: 131.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 271.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 268.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 256.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 253.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 242.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 225.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 216.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 214.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 213.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 209.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 203.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 203.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 202.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 200.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 199.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 198.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 197.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 197.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 195.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 195.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 190.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 189.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 189.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 188.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 188.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 186.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 186.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 185.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 185.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 182.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 180.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 180.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 180.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 180.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 178.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 178.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 177.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 173.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 172.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 172.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 172.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 170.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 170.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 170.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 169.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 169.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 167.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 167.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 166.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 166.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 165.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 165.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 165.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 164.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 164.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 162.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 159.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 159.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 159.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 159.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 158.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 157.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 155.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 155.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 154.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 154.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 154.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 154.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 154.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 154.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 153.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 153.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 153.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 152.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 152.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 152.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 152.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 151.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 151.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 150.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 150.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 150.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 150.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 149.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 149.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 149.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 149.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 148.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 148.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 147.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 146.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 145.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 145.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 144.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 144.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 144.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 144.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 143.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 142.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 142.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 141.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 141.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 141.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 140.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 139.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 139.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 138.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 137.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 137.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 136.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 136.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 136.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 135.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 135.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 134.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 134.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 134.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 133.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 133.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 132.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 132.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 131.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 131.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 131.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 130.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 130.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 130.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 129.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 129.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 129.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 128.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 128.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 128.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 128.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 127.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 127.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 126.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 126.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 126.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 125.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 125.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 124.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 124.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 124.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 124.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 123.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 123.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 123.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 121.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 121.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 121.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 121.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 120.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 120.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 120.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 120.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 119.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 119.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 119.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 119.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 118.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 117.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 117.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 117.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 117.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 117.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 117.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 116.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 116.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 116.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 116.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 116.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 115.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 115.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 115.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 115.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 115.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 115.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 115.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 114.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 114.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 114.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 113.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 113.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 112.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 112.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 111.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 111.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 111.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 111.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 111.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 111.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 111.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 111.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 110.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 110.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 110.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 110.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 109.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 108.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 107.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 107.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 107.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 106.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 106.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 106.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 106.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 106.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 105.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 105.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 104.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 104.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 104.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 104.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 103.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 103.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 103.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 102.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 102.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 102.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 101.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 101.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 101.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 101.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 100.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 99.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 99.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 99.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 98.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 98.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 97.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 96.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 96.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 94.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 92.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 90.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 89.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 85.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 84.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 84.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 81.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 80.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 80.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 74.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 74.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 45.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

281.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 281.3
FF:10164-103B2 76 years, female 281.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.4
Pig sample Sample description nTPM
Caudate
nTPM: 153.4
Samples: 4

Max nTPM: 198.8
Min nTPM: 118.9
Sample A Female 118.9
Sample B Female 155.0
Sample C Male 198.8
Sample D Male 140.9

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