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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:217.0 nTPM
FANTOM5:159.5 Scaled Tags Per Million
Pig:122.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041713Antibody HPA049578
Glial cells LowNot detected
Neuronal cells MediumNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 217.0
Samples: 246

Max nTPM: 394.5
Min nTPM: 73.6
Std nTPM: 53.8
Median nTPM: 213.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 394.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 389.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 382.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 380.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 366.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 351.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 343.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 341.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 319.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 313.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 312.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 309.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 309.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 305.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 304.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 300.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 300.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 297.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 296.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 295.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 294.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 293.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 292.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 291.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 290.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 290.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 289.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 281.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 276.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 276.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 276.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 273.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 272.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 272.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 272.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 271.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 270.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 268.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 267.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 266.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 266.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 264.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 262.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 262.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 261.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 261.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 261.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 260.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 259.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 256.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 254.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 253.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 253.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 252.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 249.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 248.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 248.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 247.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 247.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 245.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 245.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 245.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 244.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 244.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 242.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 242.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 241.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 241.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 240.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 240.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 240.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 240.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 240.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 239.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 239.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 238.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 238.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 237.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 237.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 236.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 235.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 234.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 234.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 233.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 232.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 231.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 230.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 228.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 228.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 228.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 228.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 227.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 227.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 227.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 227.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 227.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 226.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 226.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 226.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 224.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 224.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 223.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 223.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 222.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 222.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 222.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 221.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 221.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 221.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 221.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 221.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 219.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 219.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 218.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 217.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 217.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 216.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 216.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 215.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 215.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 214.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 214.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 214.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 213.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 213.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 212.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 212.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 212.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 211.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 210.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 209.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 207.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 207.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 206.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 205.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 204.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 204.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 204.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 203.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 203.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 202.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 201.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 201.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 200.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 200.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 200.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 199.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 199.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 199.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 199.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 198.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 198.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 198.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 197.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 197.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 197.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 196.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 196.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 196.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 195.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 194.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 194.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 193.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 193.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 193.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 192.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 192.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 190.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 189.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 189.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 188.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 188.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 186.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 186.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 186.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 186.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 185.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 185.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 183.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 182.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 182.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 181.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 181.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 180.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 180.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 178.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 178.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 178.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 178.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 177.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 177.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 176.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 175.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 175.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 174.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 174.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 174.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 173.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 173.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 172.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 171.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 171.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 171.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 169.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 168.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 166.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 166.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 166.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 165.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 165.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 165.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 163.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 162.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 162.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 161.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 161.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 160.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 160.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 159.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 158.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 157.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 156.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 156.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 156.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 155.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 154.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 153.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 151.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 148.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 146.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 145.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 143.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 138.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 132.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 132.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 130.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 129.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 127.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 126.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 123.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 117.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 111.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 108.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 98.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 90.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 73.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

159.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 159.5
FF:10164-103B2 76 years, female 159.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.6
Pig sample Sample description nTPM
Caudate
nTPM: 122.6
Samples: 4

Max nTPM: 161.6
Min nTPM: 91.2
Sample A Female 91.2
Sample B Female 124.2
Sample C Male 161.6
Sample D Male 113.2

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