MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:116.3 nTPM
HPA Brain:145.5 nTPM
GTEx:116.3 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:50.4 nTPM
Mouse:34.4 nTPM
Allen mouse:5.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 145.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 131.9
2586 Male, age 75, left hemisphere 258.6
2828 Female, age 72, unknown 169.6
2666 Male, age 74, left hemisphere 134.2
1827 Male, age 72, unknown 129.1
1833 Male, age 53, unknown 117.6
1870 Female, age 42, unknown 115.3
2219 Male, age 76, both hemispheres 102.0
2411 Female, age 72, unknown 101.4
2019 Male, age 18, unknown 95.6
1830 Male, age 51, unknown 95.5
Dorsal raphe nucleus
nTPM: 119.4
2047 Male, age 72, unknown 134.3
2016 Female, age 72, unknown 130.2
1828 Male, age 53, unknown 119.2
2750 Male, age 76, both hemispheres 107.8
2298 Female, age 72, unknown 105.5
Inferior colliculus
nTPM: 115.3
2849 Male, age 72, unknown 145.5
1848 Female, age 42, unknown 109.7
1890 Male, age 53, unknown 107.9
2097 Female, age 72, unknown 98.0
Median raphe nucleus
nTPM: 116.0
2220 Male, age 76, midline 116.0
Periaquaductal grey, anterior
nTPM: 145.5
1795 Male, age 51, unknown 165.4
1947 Male, age 18, unknown 139.7
2502 Female, age 75, unknown 131.5
Periaquaductal grey, dorsal
nTPM: 125.8
2850 Male, age 76, both hemispheres 141.0
1840 Male, age 53, unknown 133.5
1831 Male, age 72, unknown 116.8
2464 Female, age 72, unknown 111.9
Periaquaductal grey, lateral
nTPM: 124.9
2140 Male, age 76, both hemispheres 145.1
2053 Male, age 18, unknown 119.2
2272 Male, age 74, both hemispheres 110.3
Pretectal area
nTPM: 124.6
1816 Male, age 51, unknown 148.8
2825 Male, age 18, unknown 136.5
2407 Male, age 75, both hemispheres 135.8
1944 Female, age 72, unknown 134.2
2007 Male, age 72, unknown 126.4
1817 Female, age 42, unknown 125.7
2667 Female, age 75, unknown 117.2
1815 Male, age 53, unknown 117.0
2316 Male, age 76, right hemisphere 113.7
2224 Female, age 72, unknown 111.4
2273 Male, age 74, both hemispheres 104.0
Red nucleus
nTPM: 106.1
2584 Male, age 75, left hemisphere 148.4
2588 Male, age 74, left hemisphere 126.1
2769 Male, age 72, unknown 118.9
2227 Male, age 72, unknown 116.5
2725 Female, age 75, unknown 112.1
2503 Female, age 72, unknown 105.6
2823 Male, age 76, right hemisphere 100.2
2785 Male, age 18, unknown 99.0
1904 Male, age 53, unknown 89.2
1954 Female, age 42, unknown 89.1
1821 Female, age 72, unknown 84.7
1865 Male, age 51, unknown 83.8
Substantia nigra
nTPM: 122.3
2665 Male, age 74, both hemispheres 161.4
2583 Male, age 75, right hemisphere 151.8
1916 Female, age 42, unknown 146.4
2699 Male, age 18, unknown 134.1
1851 Male, age 51, unknown 132.3
2590 Female, age 75, unknown 128.9
1941 Male, age 53, unknown 119.3
1889 Female, age 72, unknown 106.3
2241 Male, age 72, unknown 75.2
2409 Female, age 72, unknown 67.5
Superior colliculus
nTPM: 133.1
2664 Male, age 75, both hemispheres 235.8
1796 Male, age 53, unknown 154.2
2261 Male, age 18, unknown 153.9
2668 Female, age 75, unknown 128.1
1839 Male, age 51, unknown 124.1
2087 Female, age 72, unknown 117.3
1995 Male, age 72, unknown 113.1
2587 Male, age 74, left hemisphere 109.4
1913 Female, age 42, unknown 103.8
1895 Male, age 76, right hemisphere 91.1
Ventral tegmental area
nTPM: 123.0
2223 Female, age 72, unknown 150.0
1942 Male, age 51, unknown 133.6
2021 Male, age 53, unknown 130.7
1915 Female, age 42, unknown 129.0
2218 Male, age 76, both hemispheres 113.5
2410 Female, age 72, unknown 81.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 116.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 116.3
Samples: 139

Max nTPM: 283.3
Min nTPM: 44.8
Std nTPM: 39.4
Median nTPM: 109.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 283.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 273.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 207.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 201.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 200.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 191.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 181.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 179.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 173.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 170.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 169.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.6
FF:10158-103A5 76 years, female 45.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 50.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.0
Samples: 4

Max nTPM: 58.0
Min nTPM: 38.4
Sample A Female 55.8
Sample B Female 39.6
Sample C Male 58.0
Sample D Male 38.4
Midbrain
nTPM: 50.4
Samples: 4

Max nTPM: 59.3
Min nTPM: 41.0
Sample A Female 53.2
Sample B Female 41.0
Sample C Male 48.1
Sample D Male 59.3
Periaqueductal gray
nTPM: 36.2
Samples: 3

Max nTPM: 44.1
Min nTPM: 30.2
Sample B Female 34.4
Sample C Male 44.1
Sample D Male 30.2
Superior colliculi
nTPM: 46.8
Samples: 4

Max nTPM: 57.5
Min nTPM: 40.4
Sample A Female 57.5
Sample B Female 42.3
Sample C Male 40.4
Sample D Male 47.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 41.2
Min nTPM: 29.7
Sample A Male 41.2
Sample B Male 30.9
Sample C Female 29.7
Sample D Female 35.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
69059956 Antisense, RP_050317_04_G04, Mouse strain C57BL/6J (56 days, male) 5.9

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