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MADCAM1
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  • MADCAM1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:11.3 nTPM
HPA:2.4 nTPM
GTEx:11.3 nTPM
FANTOM5:4.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA077998Antibody CAB075699
Endocrine cells -Not detected
Enterocytes -Not detected
Enterocytes - Microvilli -Not detected
Glandular cells Low-
Goblet cells -Not detected
Paneth cells -High





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2.4
overview
Male, age 65
Small intestine sample 232
nTPM: 0.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 3.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 3.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 11.3
Samples: 187

Max nTPM: 108.2
Min nTPM: 0.3
Std nTPM: 10.7
Median nTPM: 8.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 108.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 41.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 41.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 38.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 34.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 31.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 31.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 30.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 27.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 27.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 26.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 25.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 25.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 24.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 24.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 23.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 23.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 23.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 23.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 21.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 21.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 21.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 20.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 20.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 20.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 19.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 19.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 19.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 19.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 19.0
GTEX-1192X-2526-SM-59868 50-59 years, male 18.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 18.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 17.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 17.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 17.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 17.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 17.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 17.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 17.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 17.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 17.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 16.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 16.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 15.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 15.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 15.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 15.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 14.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 14.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 14.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 14.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 14.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 13.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 13.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 13.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 13.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 13.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 13.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 13.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 13.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 12.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 11.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 11.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 11.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 11.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 11.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 11.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 11.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 10.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 10.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 10.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 10.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 10.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 10.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 10.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 10.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 10.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 10.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 10.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 10.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 10.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 10.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 9.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 9.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 9.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 9.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 9.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 9.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 9.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 9.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 9.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 9.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 8.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 8.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 8.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 8.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 8.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 8.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 8.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 8.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 8.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 7.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 7.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 7.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 7.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 7.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 7.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 7.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 7.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 7.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 7.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 7.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 7.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 6.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 6.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 6.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 6.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 6.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 6.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 6.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 6.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 6.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 6.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 6.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 6.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 6.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 6.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 6.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 6.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 5.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 5.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 5.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 5.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 5.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 5.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 5.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 5.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 5.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 5.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 5.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 5.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 5.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 5.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 5.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 4.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 4.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 4.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 4.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 4.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 4.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 4.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 4.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 4.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 4.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 4.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 4.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 3.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 3.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 3.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 3.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 3.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 3.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 3.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 3.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 2.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 2.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 2.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 0.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 0.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 0.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 0.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 0.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 0.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 4.4
FF:10024-101D6 15,40,85 years, mixed 4.4

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