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LGALS1
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  • LGALS1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:341.0 nTPM
FANTOM5:116.2 Scaled Tags Per Million
Pig:38.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000646Antibody CAB002157
Glial cells LowLow
Neuronal cells Medium-




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

341.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 341.0
Samples: 246

Max nTPM: 1416.6
Min nTPM: 82.1
Std nTPM: 160.0
Median nTPM: 310.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1416.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 845.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 795.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 770.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 740.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 717.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 696.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 695.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 645.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 636.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 634.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 631.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 612.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 608.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 607.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 607.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 587.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 584.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 577.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 573.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 571.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 548.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 537.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 534.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 531.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 526.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 520.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 520.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 514.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 511.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 509.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 493.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 492.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 492.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 492.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 490.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 490.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 487.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 482.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 481.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 480.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 479.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 477.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 477.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 474.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 474.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 474.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 471.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 469.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 467.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 460.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 459.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 454.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 450.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 449.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 441.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 440.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 439.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 439.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 436.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 428.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 427.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 425.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 424.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 423.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 415.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 412.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 409.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 406.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 406.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 403.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 399.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 398.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 397.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 397.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 392.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 392.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 389.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 389.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 388.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 386.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 384.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 382.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 381.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 380.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 379.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 378.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 378.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 375.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 371.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 371.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 370.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 367.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 358.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 357.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 353.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 353.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 351.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 350.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 345.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 344.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 344.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 343.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 342.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 342.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 342.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 341.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 338.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 337.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 333.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 333.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 329.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 325.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 324.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 322.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 318.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 318.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 318.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 317.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 315.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 314.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 313.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 312.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 308.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 302.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 301.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 300.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 299.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 298.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 297.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 297.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 296.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 296.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 294.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 290.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 289.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 288.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 287.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 286.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 284.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 280.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 279.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 279.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 279.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 276.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 275.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 275.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 272.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 272.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 271.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 271.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 269.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 268.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 266.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 266.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 261.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 260.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 260.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 259.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 259.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 258.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 258.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 256.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 256.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 256.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 255.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 255.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 255.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 255.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 253.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 253.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 250.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 249.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 248.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 247.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 246.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 246.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 245.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 244.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 240.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 238.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 238.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 237.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 233.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 233.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 233.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 225.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 223.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 219.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 217.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 217.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 216.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 216.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 214.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 208.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 208.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 207.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 206.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 206.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 205.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 203.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 203.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 201.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 201.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 200.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 198.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 189.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 188.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 187.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 185.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 183.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 180.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 180.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 178.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 176.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 175.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 175.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 173.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 172.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 172.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 171.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 171.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 170.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 169.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 169.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 169.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 168.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 167.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 165.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 164.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 164.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 163.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 148.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 145.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 144.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 143.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 142.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 141.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 141.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 139.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 130.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 123.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 101.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 100.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 91.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 82.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

116.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 116.2
FF:10164-103B2 76 years, female 116.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.2
Pig sample Sample description nTPM
Caudate
nTPM: 38.3
Samples: 4

Max nTPM: 47.4
Min nTPM: 29.5
Sample A Female 42.9
Sample B Female 47.4
Sample C Male 29.5
Sample D Male 33.2

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