MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.1 nTPM
HPA Brain:58.4 nTPM
GTEx:31.1 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Pig:38.6 nTPM
Mouse:27.9 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 58.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.9
2411 Female, age 72, unknown 66.0
2828 Female, age 72, unknown 62.7
1870 Female, age 42, unknown 61.2
1830 Male, age 51, unknown 60.2
1833 Male, age 53, unknown 58.9
2586 Male, age 75, left hemisphere 57.0
1827 Male, age 72, unknown 52.8
2019 Male, age 18, unknown 46.0
2219 Male, age 76, both hemispheres 42.7
2666 Male, age 74, left hemisphere 41.0
Dorsal raphe nucleus
nTPM: 56.2
2750 Male, age 76, both hemispheres 66.1
2298 Female, age 72, unknown 59.9
2047 Male, age 72, unknown 55.0
2016 Female, age 72, unknown 54.4
1828 Male, age 53, unknown 45.4
Inferior colliculus
nTPM: 49.8
2849 Male, age 72, unknown 56.3
1848 Female, age 42, unknown 53.6
2097 Female, age 72, unknown 46.1
1890 Male, age 53, unknown 43.1
Median raphe nucleus
nTPM: 46.4
2220 Male, age 76, midline 46.4
Periaquaductal grey, anterior
nTPM: 56.9
2502 Female, age 75, unknown 60.9
1947 Male, age 18, unknown 57.9
1795 Male, age 51, unknown 52.0
Periaquaductal grey, dorsal
nTPM: 46.2
2464 Female, age 72, unknown 54.7
1840 Male, age 53, unknown 45.6
2850 Male, age 76, both hemispheres 43.0
1831 Male, age 72, unknown 41.4
Periaquaductal grey, lateral
nTPM: 54.6
2272 Male, age 74, both hemispheres 60.0
2053 Male, age 18, unknown 53.7
2140 Male, age 76, both hemispheres 50.0
Pretectal area
nTPM: 48.5
2667 Female, age 75, unknown 64.3
2825 Male, age 18, unknown 57.3
2273 Male, age 74, both hemispheres 56.2
2316 Male, age 76, right hemisphere 55.9
2224 Female, age 72, unknown 53.9
2407 Male, age 75, both hemispheres 50.1
1815 Male, age 53, unknown 45.4
1817 Female, age 42, unknown 41.8
2007 Male, age 72, unknown 38.8
1816 Male, age 51, unknown 35.2
1944 Female, age 72, unknown 35.0
Red nucleus
nTPM: 58.4
2769 Male, age 72, unknown 67.5
2227 Male, age 72, unknown 67.1
1865 Male, age 51, unknown 62.5
1904 Male, age 53, unknown 62.2
2785 Male, age 18, unknown 61.9
1821 Female, age 72, unknown 60.2
2503 Female, age 72, unknown 60.2
2823 Male, age 76, right hemisphere 58.6
1954 Female, age 42, unknown 57.1
2584 Male, age 75, left hemisphere 52.7
2588 Male, age 74, left hemisphere 47.0
2725 Female, age 75, unknown 44.1
Substantia nigra
nTPM: 47.8
2665 Male, age 74, both hemispheres 53.8
1851 Male, age 51, unknown 52.8
2590 Female, age 75, unknown 51.3
2699 Male, age 18, unknown 50.4
2583 Male, age 75, right hemisphere 49.8
1941 Male, age 53, unknown 49.5
1916 Female, age 42, unknown 47.8
2409 Female, age 72, unknown 43.7
1889 Female, age 72, unknown 42.7
2241 Male, age 72, unknown 36.1
Superior colliculus
nTPM: 50.1
1995 Male, age 72, unknown 60.0
1913 Female, age 42, unknown 58.6
1796 Male, age 53, unknown 58.2
1839 Male, age 51, unknown 55.4
2587 Male, age 74, left hemisphere 51.8
2664 Male, age 75, both hemispheres 45.3
1895 Male, age 76, right hemisphere 44.8
2087 Female, age 72, unknown 42.9
2261 Male, age 18, unknown 42.6
2668 Female, age 75, unknown 41.8
Ventral tegmental area
nTPM: 54.9
2223 Female, age 72, unknown 61.5
2021 Male, age 53, unknown 57.2
2410 Female, age 72, unknown 57.1
1942 Male, age 51, unknown 54.3
1915 Female, age 42, unknown 49.7
2218 Male, age 76, both hemispheres 49.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.1
Samples: 139

Max nTPM: 149.6
Min nTPM: 12.7
Std nTPM: 14.7
Median nTPM: 28.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 149.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 81.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 75.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 67.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 65.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 57.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 56.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 53.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 49.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 48.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 45.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.4
FF:10158-103A5 76 years, female 65.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.7
Samples: 4

Max nTPM: 47.1
Min nTPM: 34.3
Sample A Female 38.1
Sample B Female 35.1
Sample C Male 34.3
Sample D Male 47.1
Midbrain
nTPM: 37.9
Samples: 4

Max nTPM: 56.4
Min nTPM: 30.0
Sample A Female 56.4
Sample B Female 33.7
Sample C Male 31.5
Sample D Male 30.0
Periaqueductal gray
nTPM: 28.6
Samples: 3

Max nTPM: 30.8
Min nTPM: 26.3
Sample B Female 30.8
Sample C Male 28.8
Sample D Male 26.3
Superior colliculi
nTPM: 37.0
Samples: 4

Max nTPM: 42.6
Min nTPM: 33.8
Sample A Female 36.4
Sample B Female 42.6
Sample C Male 33.8
Sample D Male 35.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 31.4
Min nTPM: 26.4
Sample A Male 31.4
Sample B Male 26.4
Sample C Female 27.1
Sample D Female 27.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69014728 Antisense, RP_050310_01_F02, Mouse strain C57BL/6J (56 days, male) 2.2

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