We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TRIOBP
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TRIOBP
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TRIOBP
Synonyms DFNB28, HRIHFB2122, KIAA1662, TAP68, Tara
Gene descriptioni

Full gene name according to HGNC.

TRIO and F-actin binding protein
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 22
Cytoband q13.1
Chromosome location (bp) 37697048 - 37776556
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000100106 (version 109)
Entrez gene 11078
HGNC HGNC:17009
UniProt Q9H2D6 (UniProt - Evidence at protein level)
neXtProt NX_Q9H2D6
GeneCards TRIOBP
Antibodypedia TRIOBP antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

[Isoform 1]: Regulates actin cytoskeletal organization, cell spreading and cell contraction by directly binding and stabilizing filamentous F-actin and prevents its depolymerization 1, 2. May also serve as a linker protein to recruit proteins required for F-actin formation and turnover 3. Essential for correct mitotic progression 4, 5.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Actin-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cell cycle, Cell division, Mitosis
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a protein with an N-terminal pleckstrin homology domain and a C-terminal coiled-coil region. The protein interacts with trio, which is involved with neural tissue development and controlling actin cytoskeleton organization, cell motility and cell growth. The protein also associates with F-actin and stabilizes F-actin structures. Mutations in this gene have been associated with a form of autosomal recessive nonsyndromic deafness. Multiple alternatively spliced transcript variants that would encode different isoforms have been found for this gene, however some transcripts may be subject to nonsense-mediated decay (NMD). [provided by RefSeq, Nov 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
TRIOBP-203
ENSP00000386026
ENST00000403663
Q9H2D6
[Direct mapping] TRIO and F-actin-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Human disease related genes
   Nervous system diseases
   Ear disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003779 [actin binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0005925 [focal adhesion]
GO:0007049 [cell cycle]
GO:0015629 [actin cytoskeleton]
GO:0030047 [actin modification]
GO:0030496 [midbody]
GO:0031267 [small GTPase binding]
GO:0031625 [ubiquitin protein ligase binding]
GO:0045159 [myosin II binding]
GO:0051015 [actin filament binding]
GO:0051016 [barbed-end actin filament capping]
GO:0051301 [cell division]
GO:1900026 [positive regulation of substrate adhesion-dependent cell spreading]
Show all
652 aa
74 kDa
No 0
TRIOBP-204
ENSP00000383913
ENST00000407319
Q9H2D6
[Direct mapping] TRIO and F-actin-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Human disease related genes
   Nervous system diseases
   Ear disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003779 [actin binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0005925 [focal adhesion]
GO:0007049 [cell cycle]
GO:0015629 [actin cytoskeleton]
GO:0030047 [actin modification]
GO:0030496 [midbody]
GO:0031267 [small GTPase binding]
GO:0031625 [ubiquitin protein ligase binding]
GO:0045159 [myosin II binding]
GO:0051015 [actin filament binding]
GO:0051016 [barbed-end actin filament capping]
GO:0051301 [cell division]
GO:1900026 [positive regulation of substrate adhesion-dependent cell spreading]
Show all
431 aa
47.6 kDa
No 0
TRIOBP-206
ENSP00000387881
ENST00000417857
F6WYE2
[Direct mapping] TRIO and F-actin-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
256 aa
29 kDa
No 0
TRIOBP-207
ENSP00000396946
ENST00000418339
F6TR96
[Direct mapping] TRIO and F-actin-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
265 aa
29.6 kDa
No 0
TRIOBP-208
ENSP00000399006
ENST00000428075
H0Y5J9
[Direct mapping] TRIO and F-actin-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
311 aa
34.3 kDa
No 0
TRIOBP-209
ENSP00000407542
ENST00000452519
F6WMF4
[Direct mapping] TRIO and F-actin-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
83 aa
9.5 kDa
No 0
TRIOBP-211
ENSP00000496394
ENST00000644935
Q9H2D6
[Direct mapping] TRIO and F-actin-binding protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Human disease related genes
   Nervous system diseases
   Ear disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003779 [actin binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0005925 [focal adhesion]
GO:0007049 [cell cycle]
GO:0007605 [sensory perception of sound]
GO:0015629 [actin cytoskeleton]
GO:0030047 [actin modification]
GO:0030496 [midbody]
GO:0031267 [small GTPase binding]
GO:0031625 [ubiquitin protein ligase binding]
GO:0045159 [myosin II binding]
GO:0051015 [actin filament binding]
GO:0051016 [barbed-end actin filament capping]
GO:0051301 [cell division]
GO:0060088 [auditory receptor cell stereocilium organization]
GO:0120044 [stereocilium base]
GO:1900026 [positive regulation of substrate adhesion-dependent cell spreading]
Show all
2365 aa
261.4 kDa
No 0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org