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SLC5A1
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  • SLC5A1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: High
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:294.1 nTPM
HPA:294.1 nTPM
GTEx:153.5 nTPM
FANTOM5:2426.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051805Antibody HPA055106Antibody CAB015467
Endocrine cells -Not detected-
Enterocytes -Not detected-
Enterocytes - Microvilli -High-
Glandular cells High-High
Goblet cells -Not detected-
Paneth cells -Not detected-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

294.1
overview
Male, age 65
Small intestine sample 232
nTPM: 435.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 186.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 219
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 335.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 153.5
Samples: 187

Max nTPM: 938.7
Min nTPM: 0.0
Std nTPM: 199.2
Median nTPM: 53.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 938.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 898.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 702.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 670.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 669.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 651.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 606.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 591.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 572.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 559.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 532.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 530.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 500.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 498.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 482.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 478.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 467.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 465.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 462.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 461.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 461.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 461.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 448.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 426.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 418.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 409.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 400.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 393.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 393.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 392.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 388.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 380.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 373.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 360.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 354.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 345.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 336.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 331.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 322.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 318.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 309.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 292.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 276.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 274.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 264.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 256.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 239.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 238.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 235.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 222.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 213.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 209.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 208.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 204.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 199.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 185.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 180.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 180.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 172.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 171.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 166.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 165.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 160.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 157.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 150.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 147.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 142.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 136.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 135.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 133.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 130.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 129.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 127.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 126.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 126.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 124.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 122.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 122.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 120.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 116.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 114.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 114.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 114.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 112.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 99.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 85.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 82.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 79.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 79.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 79.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 66.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 60.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 55.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 53.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 51.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 51.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 45.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 43.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 42.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 29.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 28.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 27.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 25.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 25.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 25.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 24.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 23.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 21.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 20.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 19.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 18.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 17.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 17.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 15.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 14.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 11.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 10.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 10.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 9.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 9.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 9.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 7.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 7.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 6.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 5.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 5.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 4.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 4.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 4.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 4.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 4.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 4.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 4.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 3.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 3.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 3.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 3.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 3.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 2.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 0.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 0.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 0.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 0.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 0.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 0.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 0.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 0.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 0.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 0.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 0.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 0.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 0.1
GTEX-1192X-2526-SM-59868 50-59 years, male 0.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 0.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 0.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2426.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2426.9
FF:10024-101D6 15,40,85 years, mixed 2426.9

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