MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:133.5 nTPM
HPA Brain:160.0 nTPM
GTEx:133.5 nTPM
FANTOM5:619.2 Scaled Tags Per Million
Mouse:125.1 nTPM
Allen mouse:18.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 160.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 137.9
2411 Female, age 72, unknown 158.8
1830 Male, age 51, unknown 153.5
1833 Male, age 53, unknown 153.3
1870 Female, age 42, unknown 151.9
2019 Male, age 18, unknown 141.0
1827 Male, age 72, unknown 139.0
2828 Female, age 72, unknown 137.8
2666 Male, age 74, left hemisphere 127.1
2219 Male, age 76, both hemispheres 115.5
2586 Male, age 75, left hemisphere 101.3
Dorsal raphe nucleus
nTPM: 139.9
2750 Male, age 76, both hemispheres 154.3
2016 Female, age 72, unknown 149.4
1828 Male, age 53, unknown 133.1
2298 Female, age 72, unknown 133.1
2047 Male, age 72, unknown 129.6
Inferior colliculus
nTPM: 140.6
1848 Female, age 42, unknown 144.4
2849 Male, age 72, unknown 143.2
1890 Male, age 53, unknown 142.0
2097 Female, age 72, unknown 132.9
Median raphe nucleus
nTPM: 145.7
2220 Male, age 76, midline 145.7
Periaquaductal grey, anterior
nTPM: 127.3
1947 Male, age 18, unknown 141.5
1795 Male, age 51, unknown 124.5
2502 Female, age 75, unknown 116.0
Periaquaductal grey, dorsal
nTPM: 147.0
2850 Male, age 76, both hemispheres 159.3
2464 Female, age 72, unknown 145.0
1831 Male, age 72, unknown 142.8
1840 Male, age 53, unknown 140.8
Periaquaductal grey, lateral
nTPM: 160.0
2272 Male, age 74, both hemispheres 166.4
2140 Male, age 76, both hemispheres 164.5
2053 Male, age 18, unknown 149.2
Pretectal area
nTPM: 143.4
2273 Male, age 74, both hemispheres 178.0
2316 Male, age 76, right hemisphere 169.7
2667 Female, age 75, unknown 147.8
1815 Male, age 53, unknown 144.0
2224 Female, age 72, unknown 142.5
2825 Male, age 18, unknown 141.6
2407 Male, age 75, both hemispheres 139.3
2007 Male, age 72, unknown 133.3
1817 Female, age 42, unknown 129.7
1944 Female, age 72, unknown 127.2
1816 Male, age 51, unknown 124.1
Red nucleus
nTPM: 152.1
2823 Male, age 76, right hemisphere 168.6
1904 Male, age 53, unknown 163.6
1865 Male, age 51, unknown 162.9
2503 Female, age 72, unknown 158.9
1821 Female, age 72, unknown 155.1
2769 Male, age 72, unknown 154.5
2227 Male, age 72, unknown 152.3
1954 Female, age 42, unknown 151.5
2785 Male, age 18, unknown 145.9
2588 Male, age 74, left hemisphere 145.7
2725 Female, age 75, unknown 141.7
2584 Male, age 75, left hemisphere 124.9
Substantia nigra
nTPM: 132.5
2409 Female, age 72, unknown 164.5
2590 Female, age 75, unknown 142.9
2583 Male, age 75, right hemisphere 138.1
2241 Male, age 72, unknown 131.9
2699 Male, age 18, unknown 130.8
1851 Male, age 51, unknown 130.1
1889 Female, age 72, unknown 129.5
1941 Male, age 53, unknown 125.6
2665 Male, age 74, both hemispheres 119.0
1916 Female, age 42, unknown 112.7
Superior colliculus
nTPM: 141.5
1913 Female, age 42, unknown 171.5
1995 Male, age 72, unknown 157.1
1895 Male, age 76, right hemisphere 150.6
2668 Female, age 75, unknown 146.4
1839 Male, age 51, unknown 140.8
2587 Male, age 74, left hemisphere 140.1
2261 Male, age 18, unknown 138.2
2087 Female, age 72, unknown 133.8
1796 Male, age 53, unknown 127.3
2664 Male, age 75, both hemispheres 108.9
Ventral tegmental area
nTPM: 131.8
2410 Female, age 72, unknown 141.1
2223 Female, age 72, unknown 135.1
2021 Male, age 53, unknown 135.0
1942 Male, age 51, unknown 129.2
2218 Male, age 76, both hemispheres 127.2
1915 Female, age 42, unknown 123.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 133.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 133.5
Samples: 139

Max nTPM: 257.8
Min nTPM: 58.5
Std nTPM: 38.1
Median nTPM: 126.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 257.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 252.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 234.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 233.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 232.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 218.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 207.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 206.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 206.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 198.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 196.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 619.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 619.2
FF:10158-103A5 76 years, female 619.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 125.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.1
Samples: 4

Max nTPM: 131.1
Min nTPM: 121.8
Sample A Male 123.9
Sample B Male 121.8
Sample C Female 131.1
Sample D Female 123.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 18.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.7
77620754 Antisense, RP_070129_03_F07, Mouse strain C57BL/6J (56 days, male) 18.7

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