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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:118.5 nTPM
HPA:46.0 nTPM
GTEx:118.5 nTPM
FANTOM5:187.9 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.0
overview
Male, age 65
Small intestine sample 232
nTPM: 28
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 41.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 57.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 56.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 118.5
Samples: 187

Max nTPM: 475.6
Min nTPM: 17.9
Std nTPM: 91.3
Median nTPM: 84.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 475.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 375.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 375.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 358.5
GTEX-1192X-2526-SM-59868 50-59 years, male 351.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 343.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 337.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 322.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 320.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 317.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 314.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 309.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 308.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 292.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 291.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 274.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 273.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 267.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 259.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 254.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 248.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 241.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 240.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 239.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 238.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 236.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 234.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 234.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 233.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 220.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 219.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 214.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 211.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 206.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 204.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 203.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 193.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 191.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 187.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 185.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 182.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 178.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 177.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 174.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 172.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 167.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 165.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 156.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 151.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 148.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 146.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 138.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 137.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 135.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 134.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 133.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 132.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 132.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 130.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 128.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 126.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 125.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 125.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 125.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 121.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 120.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 118.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 117.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 114.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 110.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 108.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 106.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 104.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 104.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 103.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 101.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 100.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 98.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 97.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 97.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 95.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 93.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 92.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 92.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 88.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 88.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 87.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 87.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 87.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 87.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 87.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 86.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 86.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 84.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 83.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 81.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 80.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 80.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 78.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 76.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 76.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 76.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 76.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 74.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 74.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 72.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 72.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 72.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 71.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 71.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 71.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 68.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 67.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 64.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 63.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 63.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 63.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 63.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 62.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 62.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 61.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 61.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 61.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 61.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 60.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 60.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 59.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 59.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 59.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 58.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 58.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 58.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 56.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 55.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 55.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 54.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 53.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 52.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 52.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 51.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 51.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 51.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 51.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 50.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 50.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 49.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 49.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 49.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 49.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 48.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 47.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 47.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 46.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 46.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 46.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 46.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 45.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 45.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 44.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 44.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 43.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 41.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 40.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 40.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 40.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 39.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 38.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 38.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 36.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 36.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 36.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 35.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 32.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 32.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 31.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 31.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 30.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 29.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 29.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 28.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 26.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 25.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 23.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 22.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 22.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 19.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 17.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

187.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 187.9
FF:10024-101D6 15,40,85 years, mixed 187.9

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