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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

48.285
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:182.1 nTPM
HPA Brain:175.8 nTPM
GTEx:182.1 nTPM
FANTOM5:192.4 Scaled Tags Per Million
Pig:111.0 nTPM
Mouse:385.5 nTPM
Allen mouse:17.7 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA001097
Amygdala mean intensity 48.285
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract -
Basal medial amygdaloid nucleus 41.343
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 43.583
Cortical amygdala 37.766
Central amygdala 44.888
Medial amygdaloid nucleus 48.285

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.8
Sample id Sample description nTPM
Amygdala
nTPM: 175.8
2695 Female, age 67, right hemisphere 209.1
2814 Male, age 76, right hemisphere 197.2
2514 Male, age 75, right hemisphere 179.8
1987 Female, age 91, left hemisphere 148.6
2517 Female, age 94, left hemisphere 144.3
Basal amygdala
nTPM: 153.7
2609 Male, age 75, right hemisphere 229.0
2110 Male, age 80, left hemisphere 170.1
2243 Female, age 91, right hemisphere 160.3
1955 Male, age 76, both hemispheres 140.5
2685 Female, age 94, left hemisphere 120.6
2827 Female, age 67, right hemisphere 101.7
Central amygdala
nTPM: 162.2
1905 Male, age 76, both hemispheres 189.6
2515 Male, age 75, right hemisphere 186.6
2826 Female, age 94, left hemisphere 179.4
2239 Male, age 80, left hemisphere 150.7
2701 Female, age 91, right hemisphere 104.9
Corticomedial amygdala
nTPM: 150.1
2428 Male, age 75, right hemisphere 188.1
2829 Male, age 80, left hemisphere 178.4
2242 Female, age 91, right hemisphere 158.1
2429 Female, age 94, left hemisphere 138.0
2240 Male, age 76, both hemispheres 132.3
2535 Female, age 67, right hemisphere 105.7
Lateral amygdala
nTPM: 161.6
2516 Male, age 75, right hemisphere 242.1
1883 Male, age 76, both hemispheres 181.8
2534 Female, age 94, left hemisphere 171.0
2830 Female, age 67, right hemisphere 135.3
2256 Male, age 80, left hemisphere 123.3
2255 Female, age 91, right hemisphere 116.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 182.1
Samples: 152

Max nTPM: 396.5
Min nTPM: 31.7
Std nTPM: 53.9
Median nTPM: 183.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 396.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 318.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 316.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 303.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 301.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 288.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 286.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 279.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 270.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 262.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 262.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 256.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 253.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 252.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 244.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 241.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 241.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 238.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 237.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 237.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 234.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 232.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 230.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 229.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 228.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 226.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 224.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 224.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 223.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 222.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 221.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 220.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 218.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 217.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 216.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 216.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 214.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 213.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 212.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 210.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 209.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 208.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 207.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 207.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 207.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 207.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 207.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 206.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 203.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 200.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 198.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 198.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 197.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 196.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 196.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 195.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 195.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 195.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 194.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 194.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 192.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 192.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 192.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 190.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 189.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 189.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 189.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 188.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 188.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 188.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 187.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 187.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 185.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 185.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 184.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 184.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 182.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 182.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 178.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 178.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 178.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 177.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 176.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 176.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 175.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 174.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 173.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 173.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 172.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 172.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 171.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 168.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 167.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 165.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 165.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 165.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 165.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 164.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 163.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 161.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 161.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 161.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 160.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 159.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 158.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 156.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 156.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 154.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 152.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 152.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 149.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 148.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 148.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 148.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 146.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 145.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 144.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 143.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 139.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 139.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 136.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 136.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 135.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 135.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 134.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 129.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 126.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 125.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 122.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 122.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 119.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 118.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 118.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 118.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 118.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 116.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 116.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 115.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 113.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 112.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 111.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 110.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 106.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 105.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 100.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 99.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 96.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 92.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 80.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 74.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 69.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 31.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

192.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 192.4
FF:10151-102I7 76 years, female 192.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.0
Pig sample Sample description nTPM
Amygdala
nTPM: 111.0
Samples: 4

Max nTPM: 126.5
Min nTPM: 95.7
Sample A Female 126.5
Sample B Female 107.6
Sample C Male 114.1
Sample D Male 95.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

385.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 385.5
Samples: 4

Max nTPM: 425.5
Min nTPM: 366.3
Sample A Male 371.7
Sample B Male 366.3
Sample C Female 425.5
Sample D Female 378.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.7
67978674 Antisense, RP_040923_01_E08, Mouse strain C57BL/6J (56 days, male) 17.7

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