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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:220.6 nTPM
FANTOM5:213.9 Scaled Tags Per Million
Pig:137.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003040
Glial cells Medium
Neuronal cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 220.6
Samples: 246

Max nTPM: 574.6
Min nTPM: 26.6
Std nTPM: 99.1
Median nTPM: 202.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 574.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 573.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 541.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 535.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 490.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 472.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 468.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 457.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 453.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 435.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 428.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 424.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 418.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 406.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 403.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 403.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 398.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 384.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 373.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 368.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 367.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 363.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 358.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 351.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 350.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 347.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 346.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 342.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 340.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 331.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 326.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 323.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 319.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 315.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 314.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 312.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 312.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 310.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 310.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 309.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 306.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 297.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 295.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 295.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 295.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 291.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 288.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 286.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 286.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 285.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 285.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 284.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 282.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 281.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 280.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 276.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 274.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 273.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 272.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 272.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 272.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 267.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 267.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 266.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 265.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 264.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 263.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 261.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 260.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 259.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 259.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 255.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 255.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 255.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 254.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 253.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 253.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 252.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 251.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 248.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 246.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 245.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 243.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 243.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 242.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 242.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 240.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 240.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 240.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 239.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 239.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 239.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 239.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 238.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 238.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 238.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 237.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 236.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 236.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 236.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 234.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 232.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 231.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 229.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 226.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 220.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 219.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 218.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 215.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 215.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 214.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 213.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 213.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 211.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 210.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 209.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 207.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 207.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 206.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 206.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 205.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 203.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 202.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 202.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 202.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 202.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 200.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 200.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 199.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 198.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 197.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 197.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 196.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 196.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 194.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 193.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 192.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 191.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 190.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 188.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 186.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 186.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 185.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 184.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 184.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 182.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 182.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 181.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 181.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 181.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 179.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 178.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 178.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 178.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 177.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 177.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 176.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 173.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 172.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 172.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 172.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 172.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 170.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 170.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 170.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 169.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 169.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 167.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 166.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 165.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 164.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 164.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 162.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 162.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 161.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 161.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 160.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 159.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 158.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 157.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 157.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 156.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 155.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 154.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 154.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 153.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 149.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 149.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 148.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 148.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 148.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 148.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 146.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 145.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 143.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 143.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 142.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 141.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 139.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 139.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 138.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 138.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 136.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 135.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 135.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 135.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 133.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 132.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 131.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 130.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 129.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 129.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 126.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 124.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 124.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 124.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 124.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 123.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 115.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 115.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 114.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 111.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 108.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 108.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 108.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 106.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 105.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 105.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 104.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 103.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 102.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 95.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 93.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 92.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 84.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 83.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 80.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 79.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 70.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 58.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 44.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 42.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 37.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 35.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 32.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 26.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

213.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 213.9
FF:10164-103B2 76 years, female 213.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.3
Pig sample Sample description nTPM
Caudate
nTPM: 137.3
Samples: 4

Max nTPM: 167.3
Min nTPM: 100.9
Sample A Female 100.9
Sample B Female 151.3
Sample C Male 167.3
Sample D Male 129.8

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