MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.1 nTPM
HPA Brain:50.6 nTPM
GTEx:42.1 nTPM
FANTOM5:78.5 Scaled Tags Per Million
Pig:57.5 nTPM
Mouse:107.0 nTPM
Allen mouse:8.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.2
2019 Male, age 18, unknown 52.1
1870 Female, age 42, unknown 45.0
2586 Male, age 75, left hemisphere 44.8
1833 Male, age 53, unknown 44.1
2411 Female, age 72, unknown 43.7
1827 Male, age 72, unknown 41.3
2219 Male, age 76, both hemispheres 39.6
1830 Male, age 51, unknown 38.9
2828 Female, age 72, unknown 37.5
2666 Male, age 74, left hemisphere 35.5
Dorsal raphe nucleus
nTPM: 50.3
2298 Female, age 72, unknown 56.8
2047 Male, age 72, unknown 53.6
2016 Female, age 72, unknown 47.7
1828 Male, age 53, unknown 46.9
2750 Male, age 76, both hemispheres 46.4
Inferior colliculus
nTPM: 44.5
1848 Female, age 42, unknown 46.6
2097 Female, age 72, unknown 46.1
1890 Male, age 53, unknown 45.8
2849 Male, age 72, unknown 39.5
Median raphe nucleus
nTPM: 50.6
2220 Male, age 76, midline 50.6
Periaquaductal grey, anterior
nTPM: 44.3
1947 Male, age 18, unknown 48.8
2502 Female, age 75, unknown 45.8
1795 Male, age 51, unknown 38.3
Periaquaductal grey, dorsal
nTPM: 39.2
2464 Female, age 72, unknown 44.4
2850 Male, age 76, both hemispheres 39.6
1840 Male, age 53, unknown 36.7
1831 Male, age 72, unknown 36.2
Periaquaductal grey, lateral
nTPM: 38.8
2272 Male, age 74, both hemispheres 46.0
2053 Male, age 18, unknown 36.3
2140 Male, age 76, both hemispheres 34.2
Pretectal area
nTPM: 45.7
1817 Female, age 42, unknown 53.7
2224 Female, age 72, unknown 51.5
2273 Male, age 74, both hemispheres 48.6
2007 Male, age 72, unknown 48.5
2407 Male, age 75, both hemispheres 47.3
1815 Male, age 53, unknown 47.1
2667 Female, age 75, unknown 46.7
1944 Female, age 72, unknown 43.7
1816 Male, age 51, unknown 40.1
2316 Male, age 76, right hemisphere 38.2
2825 Male, age 18, unknown 37.5
Red nucleus
nTPM: 44.1
1821 Female, age 72, unknown 59.7
1865 Male, age 51, unknown 54.5
1904 Male, age 53, unknown 48.5
1954 Female, age 42, unknown 46.0
2785 Male, age 18, unknown 44.7
2725 Female, age 75, unknown 43.3
2769 Male, age 72, unknown 42.8
2823 Male, age 76, right hemisphere 41.8
2227 Male, age 72, unknown 41.5
2503 Female, age 72, unknown 39.7
2584 Male, age 75, left hemisphere 36.6
2588 Male, age 74, left hemisphere 29.5
Substantia nigra
nTPM: 46.3
2241 Male, age 72, unknown 54.0
1851 Male, age 51, unknown 52.2
1916 Female, age 42, unknown 50.7
1889 Female, age 72, unknown 49.0
1941 Male, age 53, unknown 48.6
2409 Female, age 72, unknown 48.2
2699 Male, age 18, unknown 47.3
2590 Female, age 75, unknown 43.5
2583 Male, age 75, right hemisphere 36.4
2665 Male, age 74, both hemispheres 32.8
Superior colliculus
nTPM: 41.8
2587 Male, age 74, left hemisphere 49.5
1839 Male, age 51, unknown 45.7
1913 Female, age 42, unknown 45.0
1895 Male, age 76, right hemisphere 42.5
2668 Female, age 75, unknown 41.2
2664 Male, age 75, both hemispheres 40.9
1995 Male, age 72, unknown 40.5
1796 Male, age 53, unknown 39.4
2261 Male, age 18, unknown 36.5
2087 Female, age 72, unknown 36.4
Ventral tegmental area
nTPM: 47.2
2410 Female, age 72, unknown 55.7
2218 Male, age 76, both hemispheres 48.5
2223 Female, age 72, unknown 47.7
1915 Female, age 42, unknown 47.1
2021 Male, age 53, unknown 42.4
1942 Male, age 51, unknown 41.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.1
Samples: 139

Max nTPM: 68.4
Min nTPM: 23.7
Std nTPM: 8.3
Median nTPM: 40.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 68.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 66.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 62.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 61.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 60.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 60.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 60.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 60.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 58.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 56.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 56.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 78.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.5
FF:10158-103A5 76 years, female 78.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.6
Samples: 4

Max nTPM: 60.2
Min nTPM: 46.7
Sample A Female 60.2
Sample B Female 46.7
Sample C Male 46.7
Sample D Male 56.6
Midbrain
nTPM: 57.5
Samples: 4

Max nTPM: 81.8
Min nTPM: 43.4
Sample A Female 81.8
Sample B Female 54.3
Sample C Male 50.4
Sample D Male 43.4
Periaqueductal gray
nTPM: 43.9
Samples: 3

Max nTPM: 45.2
Min nTPM: 42.8
Sample B Female 45.2
Sample C Male 42.8
Sample D Male 43.8
Superior colliculi
nTPM: 52.7
Samples: 4

Max nTPM: 59.9
Min nTPM: 42.7
Sample A Female 55.5
Sample B Female 42.7
Sample C Male 59.9
Sample D Male 52.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 107.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.0
Samples: 4

Max nTPM: 112.3
Min nTPM: 104.4
Sample A Male 112.3
Sample B Male 105.5
Sample C Female 105.8
Sample D Female 104.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
279 Antisense, RP_Baylor_253892, Mouse strain C57BL/6J (56 days, male) 8.7
278 Antisense, RP_Baylor_253892, Mouse strain C57BL/6J (56 days, male) 4.4

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