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ATP6V1D
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:112.6 nTPM
HPA Brain:82.4 nTPM
GTEx:112.6 nTPM
FANTOM5:126.0 Scaled Tags Per Million
Pig:61.9 nTPM
Mouse:93.0 nTPM
Allen mouse:21.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.4
Sample id Sample description nTPM
Amygdala
nTPM: 82.4
2814 Male, age 76, right hemisphere 93.5
1987 Female, age 91, left hemisphere 86.6
2514 Male, age 75, right hemisphere 85.8
2517 Female, age 94, left hemisphere 84.4
2695 Female, age 67, right hemisphere 61.7
Basal amygdala
nTPM: 77.3
2243 Female, age 91, right hemisphere 92.5
2110 Male, age 80, left hemisphere 89.7
1955 Male, age 76, both hemispheres 83.8
2609 Male, age 75, right hemisphere 78.5
2685 Female, age 94, left hemisphere 70.6
2827 Female, age 67, right hemisphere 48.5
Central amygdala
nTPM: 77.3
2239 Male, age 80, left hemisphere 87.6
1905 Male, age 76, both hemispheres 85.5
2515 Male, age 75, right hemisphere 75.4
2701 Female, age 91, right hemisphere 75.4
2826 Female, age 94, left hemisphere 62.4
Corticomedial amygdala
nTPM: 80.9
2829 Male, age 80, left hemisphere 97.1
2242 Female, age 91, right hemisphere 85.4
2429 Female, age 94, left hemisphere 85.4
2240 Male, age 76, both hemispheres 83.4
2428 Male, age 75, right hemisphere 74.7
2535 Female, age 67, right hemisphere 59.4
Lateral amygdala
nTPM: 70.7
1883 Male, age 76, both hemispheres 94.5
2516 Male, age 75, right hemisphere 78.5
2534 Female, age 94, left hemisphere 73.3
2255 Female, age 91, right hemisphere 65.0
2256 Male, age 80, left hemisphere 63.5
2830 Female, age 67, right hemisphere 49.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 112.6
Samples: 152

Max nTPM: 248.8
Min nTPM: 50.6
Std nTPM: 38.3
Median nTPM: 107.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 248.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 244.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 241.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 235.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 202.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 193.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 189.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 176.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 173.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 172.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 170.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 168.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 165.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 162.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 160.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 159.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 158.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 156.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 156.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 154.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 153.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 153.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 149.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 149.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 148.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 146.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 143.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 142.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 142.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 142.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 141.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 141.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 141.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 140.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 139.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 137.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 137.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 134.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 134.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 132.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 130.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 130.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 130.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 129.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 129.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 128.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 127.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 125.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 124.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 123.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 123.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 121.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 121.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 121.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 121.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 120.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 118.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 117.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 115.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 114.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 114.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 113.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 113.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 112.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 112.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 111.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 110.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 110.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 110.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 109.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 109.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 109.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 109.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 109.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 108.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 108.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 106.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 106.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 105.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 104.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 104.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 102.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 102.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 100.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 100.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 99.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 99.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 99.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 97.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 95.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 94.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 94.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 94.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 94.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 94.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 94.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 93.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 93.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 92.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 91.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 90.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 89.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 89.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 88.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 88.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 87.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 87.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 87.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 87.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 87.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 86.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 86.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 86.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 85.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 85.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 85.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 83.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 83.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 82.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 81.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 81.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 80.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 80.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 78.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 78.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 76.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 75.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 75.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 75.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 74.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 72.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 72.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 71.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 71.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 70.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 70.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 70.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 70.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 70.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 69.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 68.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 68.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 68.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 68.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 66.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 65.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 64.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 60.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 58.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 58.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 57.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 50.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

126.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 126.0
FF:10151-102I7 76 years, female 126.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.9
Pig sample Sample description nTPM
Amygdala
nTPM: 61.9
Samples: 4

Max nTPM: 76.8
Min nTPM: 55.4
Sample A Female 76.8
Sample B Female 55.4
Sample C Male 57.3
Sample D Male 57.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 93.0
Samples: 4

Max nTPM: 102.7
Min nTPM: 89.3
Sample A Male 102.7
Sample B Male 89.9
Sample C Female 90.1
Sample D Female 89.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.1
74047915 Antisense, RP_051214_02_C12, Mouse strain C57BL/6J (56 days, male) 21.3
67787352 Antisense, RP_040920_01_A06, Mouse strain C57BL/6J (56 days, male) 20.9

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