We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
LGMN
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • LGMN
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

LGMN
Synonyms LGMN1, PRSC1
Gene descriptioni

Full gene name according to HGNC.

Legumain
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 14
Cytoband q32.12
Chromosome location (bp) 92703807 - 92748679
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

11
Ensembl ENSG00000100600 (version 109)
Entrez gene 5641
HGNC HGNC:9472
UniProt Q99538 (UniProt - Evidence at protein level)
neXtProt NX_Q99538
GeneCards LGMN
Antibodypedia LGMN antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Has a strict specificity for hydrolysis of asparaginyl bonds 1. Can also cleave aspartyl bonds slowly, especially under acidic conditions 2. Involved in the processing of proteins for MHC class II antigen presentation in the lysosomal/endosomal system 3. Also involved in MHC class I antigen presentation in cross-presenting dendritic cells by mediating cleavage and maturation of Perforin-2 (MPEG1), thereby promoting antigen translocation in the cytosol (By similarity). Required for normal lysosomal protein degradation in renal proximal tubules (By similarity). Required for normal degradation of internalized EGFR (By similarity). Plays a role in the regulation of cell proliferation via its role in EGFR degradation (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Hydrolase, Protease, Thiol protease
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a cysteine protease that has a strict specificity for hydrolysis of asparaginyl bonds. This enzyme may be involved in the processing of bacterial peptides and endogenous proteins for MHC class II presentation in the lysosomal/endosomal systems. Enzyme activation is triggered by acidic pH and appears to be autocatalytic. Protein expression occurs after monocytes differentiate into dendritic cells. A fully mature, active enzyme is produced following lipopolysaccharide expression in mature dendritic cells. Overexpression of this gene may be associated with the majority of solid tumor types. This gene has a pseudogene on chromosome 13. Several alternatively spliced transcript variants have been described, but the biological validity of only two has been determined. These two variants encode the same isoform. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
LGMN-201
ENSP00000334052
ENST00000334869
Q99538
[Direct mapping] Legumain
Show all
Q53XC6
[Target identity:100%; Query identity:100%] Legumain
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Cysteine-type peptidases
Metabolic proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003014 [renal system process]
GO:0004197 [cysteine-type endopeptidase activity]
GO:0005576 [extracellular region]
GO:0005737 [cytoplasm]
GO:0005764 [lysosome]
GO:0005770 [late endosome]
GO:0006508 [proteolysis]
GO:0006624 [vacuolar protein processing]
GO:0007613 [memory]
GO:0008233 [peptidase activity]
GO:0008234 [cysteine-type peptidase activity]
GO:0008284 [positive regulation of cell population proliferation]
GO:0008306 [associative learning]
GO:0010447 [response to acidic pH]
GO:0010629 [negative regulation of gene expression]
GO:0016787 [hydrolase activity]
GO:0019886 [antigen processing and presentation of exogenous peptide antigen via MHC class II]
GO:0032801 [receptor catabolic process]
GO:0035729 [cellular response to hepatocyte growth factor stimulus]
GO:0036021 [endolysosome lumen]
GO:0040015 [negative regulation of multicellular organism growth]
GO:0042359 [vitamin D metabolic process]
GO:0043202 [lysosomal lumen]
GO:0043524 [negative regulation of neuron apoptotic process]
GO:0045177 [apical part of cell]
GO:0045931 [positive regulation of mitotic cell cycle]
GO:0048156 [tau protein binding]
GO:0048471 [perinuclear region of cytoplasm]
GO:0051603 [proteolysis involved in protein catabolic process]
GO:0070062 [extracellular exosome]
GO:0071277 [cellular response to calcium ion]
GO:0090026 [positive regulation of monocyte chemotaxis]
GO:0097061 [dendritic spine organization]
GO:0097202 [activation of cysteine-type endopeptidase activity]
GO:0097264 [self proteolysis]
GO:0110165 [cellular anatomical entity]
GO:1900273 [positive regulation of long-term synaptic potentiation]
GO:1901185 [negative regulation of ERBB signaling pathway]
GO:1904646 [cellular response to amyloid-beta]
GO:2001028 [positive regulation of endothelial cell chemotaxis]
Show all
433 aa
49.4 kDa
Yes 0
LGMN-202
ENSP00000376911
ENST00000393218
Q99538
[Direct mapping] Legumain
Show all
Q53XC6
[Target identity:100%; Query identity:100%] Legumain
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Cysteine-type peptidases
Metabolic proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003014 [renal system process]
GO:0004197 [cysteine-type endopeptidase activity]
GO:0005576 [extracellular region]
GO:0005737 [cytoplasm]
GO:0005764 [lysosome]
GO:0005770 [late endosome]
GO:0006508 [proteolysis]
GO:0006624 [vacuolar protein processing]
GO:0007613 [memory]
GO:0008233 [peptidase activity]
GO:0008234 [cysteine-type peptidase activity]
GO:0008284 [positive regulation of cell population proliferation]
GO:0008306 [associative learning]
GO:0010447 [response to acidic pH]
GO:0010629 [negative regulation of gene expression]
GO:0016787 [hydrolase activity]
GO:0019886 [antigen processing and presentation of exogenous peptide antigen via MHC class II]
GO:0032801 [receptor catabolic process]
GO:0035729 [cellular response to hepatocyte growth factor stimulus]
GO:0036021 [endolysosome lumen]
GO:0042359 [vitamin D metabolic process]
GO:0043202 [lysosomal lumen]
GO:0043524 [negative regulation of neuron apoptotic process]
GO:0045931 [positive regulation of mitotic cell cycle]
GO:0048156 [tau protein binding]
GO:0048471 [perinuclear region of cytoplasm]
GO:0051603 [proteolysis involved in protein catabolic process]
GO:0070062 [extracellular exosome]
GO:0071277 [cellular response to calcium ion]
GO:0090026 [positive regulation of monocyte chemotaxis]
GO:0097061 [dendritic spine organization]
GO:0097202 [activation of cysteine-type endopeptidase activity]
GO:0097264 [self proteolysis]
GO:0110165 [cellular anatomical entity]
GO:1900273 [positive regulation of long-term synaptic potentiation]
GO:1901185 [negative regulation of ERBB signaling pathway]
GO:1904646 [cellular response to amyloid-beta]
GO:2001028 [positive regulation of endothelial cell chemotaxis]
Show all
433 aa
49.4 kDa
Yes 0
LGMN-203
ENSP00000451797
ENST00000553371
G3V5B2
[Direct mapping] Legumain
Show all
Metabolic proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0016787 [hydrolase activity]
GO:0110165 [cellular anatomical entity]
Show all
57 aa
6.3 kDa
Yes 0
LGMN-204
ENSP00000450854
ENST00000553802
G3V2T4
[Direct mapping] Legumain
Show all
Metabolic proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0016787 [hydrolase activity]
GO:0110165 [cellular anatomical entity]
Show all
135 aa
14.6 kDa
Yes 0
LGMN-205
ENSP00000450619
ENST00000553918
G3V2E9
[Direct mapping] Legumain
Show all
Metabolic proteins
   Secreted proteins predicted by MDSEC
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
19 aa
2 kDa
Yes 0
LGMN-206
ENSP00000452268
ENST00000554080
G3V5B2
[Direct mapping] Legumain
Show all
Metabolic proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0016787 [hydrolase activity]
GO:0110165 [cellular anatomical entity]
Show all
57 aa
6.3 kDa
Yes 0
LGMN-208
ENSP00000450677
ENST00000554397
G3V4P5
[Direct mapping] Legumain
Show all
Metabolic proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0016787 [hydrolase activity]
GO:0110165 [cellular anatomical entity]
Show all
78 aa
8.7 kDa
Yes 0
LGMN-209
ENSP00000451916
ENST00000554919
G3V4P5
[Direct mapping] Legumain
Show all
Metabolic proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0016787 [hydrolase activity]
GO:0110165 [cellular anatomical entity]
Show all
78 aa
8.7 kDa
Yes 0
LGMN-210
ENSP00000451854
ENST00000555169
H0YJN9
[Direct mapping] Legumain
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0016787 [hydrolase activity]
GO:0110165 [cellular anatomical entity]
Show all
91 aa
9.7 kDa
No 0
LGMN-211
ENSP00000451861
ENST00000555699
Q99538
[Direct mapping] Legumain
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Cysteine-type peptidases
Metabolic proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003014 [renal system process]
GO:0004197 [cysteine-type endopeptidase activity]
GO:0005576 [extracellular region]
GO:0005737 [cytoplasm]
GO:0005764 [lysosome]
GO:0005770 [late endosome]
GO:0006508 [proteolysis]
GO:0006624 [vacuolar protein processing]
GO:0007613 [memory]
GO:0008233 [peptidase activity]
GO:0008234 [cysteine-type peptidase activity]
GO:0008284 [positive regulation of cell population proliferation]
GO:0008306 [associative learning]
GO:0010447 [response to acidic pH]
GO:0010629 [negative regulation of gene expression]
GO:0016787 [hydrolase activity]
GO:0019886 [antigen processing and presentation of exogenous peptide antigen via MHC class II]
GO:0032801 [receptor catabolic process]
GO:0035729 [cellular response to hepatocyte growth factor stimulus]
GO:0036021 [endolysosome lumen]
GO:0042359 [vitamin D metabolic process]
GO:0043202 [lysosomal lumen]
GO:0043524 [negative regulation of neuron apoptotic process]
GO:0045931 [positive regulation of mitotic cell cycle]
GO:0048156 [tau protein binding]
GO:0048471 [perinuclear region of cytoplasm]
GO:0051603 [proteolysis involved in protein catabolic process]
GO:0070062 [extracellular exosome]
GO:0071277 [cellular response to calcium ion]
GO:0090026 [positive regulation of monocyte chemotaxis]
GO:0097061 [dendritic spine organization]
GO:0097202 [activation of cysteine-type endopeptidase activity]
GO:0097264 [self proteolysis]
GO:0110165 [cellular anatomical entity]
GO:1900273 [positive regulation of long-term synaptic potentiation]
GO:1901185 [negative regulation of ERBB signaling pathway]
GO:1904646 [cellular response to amyloid-beta]
GO:2001028 [positive regulation of endothelial cell chemotaxis]
Show all
372 aa
42 kDa
Yes 0
LGMN-216
ENSP00000452572
ENST00000557434
Q99538
[Direct mapping] Legumain
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Cysteine-type peptidases
Metabolic proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Cancer-related genes
   Candidate cancer biomarkers
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003014 [renal system process]
GO:0004197 [cysteine-type endopeptidase activity]
GO:0005576 [extracellular region]
GO:0005737 [cytoplasm]
GO:0005764 [lysosome]
GO:0005770 [late endosome]
GO:0006508 [proteolysis]
GO:0006624 [vacuolar protein processing]
GO:0007613 [memory]
GO:0008233 [peptidase activity]
GO:0008234 [cysteine-type peptidase activity]
GO:0008284 [positive regulation of cell population proliferation]
GO:0008306 [associative learning]
GO:0010447 [response to acidic pH]
GO:0010629 [negative regulation of gene expression]
GO:0016787 [hydrolase activity]
GO:0019886 [antigen processing and presentation of exogenous peptide antigen via MHC class II]
GO:0032801 [receptor catabolic process]
GO:0035729 [cellular response to hepatocyte growth factor stimulus]
GO:0036021 [endolysosome lumen]
GO:0042359 [vitamin D metabolic process]
GO:0043202 [lysosomal lumen]
GO:0043524 [negative regulation of neuron apoptotic process]
GO:0045931 [positive regulation of mitotic cell cycle]
GO:0048156 [tau protein binding]
GO:0048471 [perinuclear region of cytoplasm]
GO:0051603 [proteolysis involved in protein catabolic process]
GO:0070062 [extracellular exosome]
GO:0071277 [cellular response to calcium ion]
GO:0090026 [positive regulation of monocyte chemotaxis]
GO:0097061 [dendritic spine organization]
GO:0097202 [activation of cysteine-type endopeptidase activity]
GO:0097264 [self proteolysis]
GO:0110165 [cellular anatomical entity]
GO:1900273 [positive regulation of long-term synaptic potentiation]
GO:1901185 [negative regulation of ERBB signaling pathway]
GO:1904646 [cellular response to amyloid-beta]
GO:2001028 [positive regulation of endothelial cell chemotaxis]
Show all
376 aa
42.9 kDa
Yes 0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org