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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:187.8 nTPM
HPA Brain:106.0 nTPM
GTEx:187.8 nTPM
FANTOM5:75.1 Scaled Tags Per Million
Pig:26.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 96.4
2565 Male, age 75, midline 129.9
2194 Female, age 79, both hemispheres 94.7
2816 Male, age 47, midline 92.2
1981 Female, age 72, midline 83.7
2048 Male, age 55, midline 81.4
Cervical spinal cord, dorsal horn
nTPM: 89.3
2296 Male, age 66, both hemispheres 102.2
1877 Male, age 55, unknown 94.0
2069 Male, age 47, both hemispheres 86.5
2297 Male, age 75, both hemispheres 86.4
2173 Female, age 72, unknown 84.5
2721 Male, age 90, both hemispheres 82.1
Cervical spinal cord, ventral horn
nTPM: 106.0
2480 Male, age 75, both hemispheres 139.8
2809 Male, age 90, both hemispheres 115.7
2295 Male, age 66, both hemispheres 104.7
2820 Female, age 79, both hemispheres 96.9
2068 Male, age 55, unknown 92.5
2098 Female, age 72, unknown 86.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 187.8
Samples: 159

Max nTPM: 349.0
Min nTPM: 101.6
Std nTPM: 44.7
Median nTPM: 189.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 349.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 331.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 330.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 293.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 282.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 279.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 267.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 267.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 265.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 262.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 260.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 253.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 253.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 250.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 241.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 240.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 239.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 237.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 235.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 234.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 232.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 232.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 232.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 229.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 229.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 228.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 227.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 225.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 224.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 221.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 219.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 219.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 218.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 218.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 218.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 217.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 215.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 214.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 214.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 213.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 211.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 210.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 210.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 209.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 208.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 207.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 207.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 205.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 204.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 202.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 202.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 202.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 201.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 200.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 199.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 199.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 199.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 199.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 199.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 198.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 198.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 198.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 198.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 198.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 197.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 196.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 196.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 195.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 195.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 194.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 194.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 192.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 192.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 192.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 191.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 191.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 191.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 190.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 190.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 189.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 189.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 188.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 186.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 184.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 182.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 181.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 180.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 179.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 176.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 175.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 174.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 174.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 174.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 173.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 171.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 170.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 169.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 169.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 169.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 169.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 169.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 168.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 167.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 166.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 166.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 165.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 164.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 164.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 164.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 164.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 162.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 162.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 162.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 161.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 160.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 160.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 160.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 158.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 158.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 158.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 157.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 155.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 155.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 154.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 153.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 153.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 153.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 151.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 151.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 151.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 150.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 145.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 142.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 142.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 142.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 141.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 138.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 138.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 137.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 135.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 135.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 135.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 134.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 132.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 132.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 132.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 129.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 128.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 125.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 124.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 123.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 114.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 114.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 113.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 109.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 109.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 108.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 106.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 101.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 75.1
FF:10181-103D1 60 years, female 81.7
FF:10159-103A6 76 years, female 68.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 22.3
Samples: 4

Max nTPM: 24.1
Min nTPM: 19.5
Sample A Female 24.1
Sample B Female 19.5
Sample C Male 23.4
Sample D Male 22.0
Ventral spinal cord
nTPM: 26.4
Samples: 4

Max nTPM: 30.0
Min nTPM: 21.6
Sample A Female 30.0
Sample B Female 26.0
Sample C Male 27.8
Sample D Male 21.6

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