HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.7 nTPM
HPA Brain:9.3 nTPM
GTEx:55.7 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:24.4 nTPM
Mouse:59.3 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 9.3
Sample id Sample description nTPM
Hippocampus
nTPM: 9.3
1898 Male, age 80, left hemisphere 10.5
2621 Female, age 67, right hemisphere 10.2
2529 Female, age 94, left hemisphere 9.9
1855 Male, age 76, left hemisphere 9.1
2148 Female, age 91, left hemisphere 8.3
1911 Female, age 85, right hemisphere 8.0
Dentate gyrus
nTPM: 8.6
2530 Female, age 94, left hemisphere 10.1
2010 Male, age 76, both hemispheres 9.4
1927 Female, age 91, both hemispheres 8.9
2528 Male, age 74, both hemispheres 8.7
2246 Female, age 85, both hemispheres 8.0
2531 Female, age 67, both hemispheres 6.5
Entorhinal gyrus
nTPM: 7.8
1787 Male, age 76, left hemisphere 8.9
2117 Female, age 91, right hemisphere 8.3
2686 Male, age 75, right hemisphere 8.3
2764 Male, age 80, right hemisphere 7.6
1938 Female, age 85, left hemisphere 7.0
2613 Female, age 94, left hemisphere 6.6
Hippocampus, CA1
nTPM: 8.4
2045 Male, age 76, both hemispheres 10.8
1873 Female, age 85, both hemispheres 8.9
2082 Female, age 91, right hemisphere 8.4
2527 Male, age 74, both hemispheres 7.9
2749 Male, age 80, left hemisphere 6.2
Hippocampus, CA2
nTPM: 9.1
2249 Male, age 74, both hemispheres 11.1
1940 Female, age 85, left hemisphere 10.0
1963 Male, age 80, left hemisphere 9.2
2113 Female, age 91, right hemisphere 9.1
1892 Male, age 76, both hemispheres 8.4
2437 Female, age 94, left hemisphere 6.9
Hippocampus, CA3
nTPM: 8.5
2436 Male, age 74, both hemispheres 11.2
1867 Male, age 76, both hemispheres 9.5
2620 Female, age 94, left hemisphere 8.4
1891 Female, age 85, both hemispheres 7.7
2861 Female, age 67, both hemispheres 7.4
2137 Male, age 80, left hemisphere 6.8
Parahippocampal cortex
nTPM: 8.9
2018 Male, age 76, both hemispheres 10.7
2245 Female, age 91, both hemispheres 9.9
2250 Female, age 67, right hemisphere 9.5
1933 Female, age 85, both hemispheres 9.2
2693 Female, age 94, both hemispheres 8.8
1990 Female, age 91, right hemisphere 8.5
2622 Female, age 67, right hemisphere 8.4
1850 Male, age 80, both hemispheres 8.1
2532 Female, age 72, left hemisphere 7.9
2692 Male, age 74, both hemispheres 7.7
Perirhinal gyrus
nTPM: 8.7
1847 Female, age 91, left hemisphere 9.2
2848 Male, age 76, right hemisphere 9.2
1841 Female, age 85, right hemisphere 8.7
1794 Male, age 80, right hemisphere 8.6
2521 Female, age 94, right hemisphere 8.1
Subiculum
nTPM: 8.4
2042 Male, age 76, both hemispheres 10.4
2729 Female, age 91, right hemisphere 9.3
2438 Female, age 94, left hemisphere 8.4
1901 Male, age 80, both hemispheres 8.1
2619 Male, age 74, both hemispheres 8.0
1977 Female, age 85, both hemispheres 6.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 55.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 55.7
Samples: 197

Max nTPM: 265.0
Min nTPM: 26.1
Std nTPM: 22.1
Median nTPM: 52.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 265.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 153.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 115.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 98.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 96.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 92.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 91.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 87.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 86.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 86.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 84.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 28.2
FF:10169-103B7 60 years, female 29.0
FF:10153-102I9 76 years, female 27.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 24.4
Pig sample Sample description nTPM
Subiculum
nTPM: 23.1
Samples: 4

Max nTPM: 32.2
Min nTPM: 19.2
Sample A Female 32.2
Sample B Female 19.2
Sample C Male 21.3
Sample D Male 19.6
Dorsal hippocampus
nTPM: 20.1
Samples: 4

Max nTPM: 25.3
Min nTPM: 15.9
Sample A Female 25.3
Sample B Female 18.3
Sample C Male 21.0
Sample D Male 15.9
Entorhinal cortex
nTPM: 23.8
Samples: 4

Max nTPM: 28.2
Min nTPM: 15.9
Sample A Female 26.4
Sample B Female 28.2
Sample C Male 24.8
Sample D Male 15.9
Ventral hippocampus
nTPM: 24.4
Samples: 4

Max nTPM: 29.8
Min nTPM: 18.2
Sample A Female 29.8
Sample B Female 21.2
Sample C Male 28.4
Sample D Male 18.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 59.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 59.1
Samples: 4

Max nTPM: 63.1
Min nTPM: 56.9
Sample A Male 56.9
Sample B Male 57.2
Sample C Female 63.1
Sample D Female 59.3
Hippocampal formation
nTPM: 59.3
Samples: 4

Max nTPM: 69.2
Min nTPM: 50.7
Sample A Male 69.2
Sample B Male 50.7
Sample C Female 57.7
Sample D Female 59.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
70539164 Antisense, RP_050324_02_A11, Mouse strain C57BL/6J (56 days, male) 1.2
75990413 Antisense, RP_060608_01_A05, Mouse strain C57BL/6J (56 days, male) 0.4
74800893 Antisense, RP_060315_02_A03, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org