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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:148.7 nTPM
HPA:118.1 nTPM
GTEx:148.7 nTPM
FANTOM5:408.6 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.1
overview
Male, age 65
Small intestine sample 232
nTPM: 114.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 128.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 105
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 123.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 148.7
Samples: 187

Max nTPM: 394.4
Min nTPM: 37.8
Std nTPM: 68.9
Median nTPM: 140.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 394.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 382.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 354.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 315.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 292.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 278.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 273.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 267.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 264.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 262.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 260.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 254.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 251.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 249.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 247.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 243.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 236.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 229.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 227.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 226.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 224.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 223.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 222.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 222.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 222.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 221.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 220.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 219.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 218.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 216.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 215.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 215.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 215.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 214.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 212.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 212.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 212.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 211.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 210.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 210.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 209.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 208.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 207.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 207.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 203.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 201.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 196.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 196.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 196.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 195.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 194.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 194.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 190.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 190.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 188.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 187.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 186.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 186.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 184.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 184.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 184.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 182.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 182.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 178.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 178.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 176.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 173.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 172.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 172.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 171.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 170.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 170.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 166.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 166.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 165.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 164.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 162.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 162.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 161.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 161.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 159.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 157.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 155.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 155.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 151.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 150.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 149.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 146.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 145.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 145.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 144.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 144.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 142.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 140.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 140.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 137.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 136.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 134.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 134.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 133.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 131.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 130.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 127.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 124.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 124.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 124.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 124.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 123.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 122.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 122.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 120.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 119.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 119.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 118.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 118.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 117.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 117.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 117.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 112.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 110.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 109.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 107.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 107.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 106.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 106.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 104.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 103.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 101.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 101.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 101.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 101.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 99.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 99.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 95.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 95.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 95.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 94.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 93.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 92.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 91.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 90.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 90.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 89.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 88.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 87.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 87.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 86.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 86.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 86.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 85.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 80.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 80.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 80.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 79.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 78.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 77.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 77.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 75.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 73.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 73.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 72.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 72.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 71.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 71.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 70.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 70.5
GTEX-1192X-2526-SM-59868 50-59 years, male 69.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 68.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 68.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 67.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 65.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 64.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 62.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 60.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 57.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 56.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 55.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 55.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 54.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 52.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 51.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 50.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 50.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 48.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 42.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 41.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 37.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

408.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 408.6
FF:10024-101D6 15,40,85 years, mixed 408.6

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