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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:10.7 nTPM
HPA Brain:11.8 nTPM
GTEx:10.7 nTPM
FANTOM5:31.0 Scaled Tags Per Million
Pig:12.4 nTPM
Mouse:41.9 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.8
Sample id Sample description nTPM
Amygdala
nTPM: 11.8
2814 Male, age 76, right hemisphere 18.4
2514 Male, age 75, right hemisphere 11.0
2695 Female, age 67, right hemisphere 10.8
2517 Female, age 94, left hemisphere 10.5
1987 Female, age 91, left hemisphere 8.4
Basal amygdala
nTPM: 10.3
1955 Male, age 76, both hemispheres 13.5
2685 Female, age 94, left hemisphere 10.5
2609 Male, age 75, right hemisphere 10.4
2110 Male, age 80, left hemisphere 9.5
2243 Female, age 91, right hemisphere 9.2
2827 Female, age 67, right hemisphere 8.6
Central amygdala
nTPM: 10.7
1905 Male, age 76, both hemispheres 15.3
2515 Male, age 75, right hemisphere 10.1
2826 Female, age 94, left hemisphere 10.1
2239 Male, age 80, left hemisphere 9.5
2701 Female, age 91, right hemisphere 8.5
Corticomedial amygdala
nTPM: 10.9
2240 Male, age 76, both hemispheres 14.8
2829 Male, age 80, left hemisphere 11.9
2429 Female, age 94, left hemisphere 11.3
2428 Male, age 75, right hemisphere 10.4
2242 Female, age 91, right hemisphere 9.4
2535 Female, age 67, right hemisphere 8.0
Lateral amygdala
nTPM: 9.8
1883 Male, age 76, both hemispheres 15.7
2516 Male, age 75, right hemisphere 10.3
2534 Female, age 94, left hemisphere 9.4
2830 Female, age 67, right hemisphere 8.3
2256 Male, age 80, left hemisphere 7.7
2255 Female, age 91, right hemisphere 7.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 10.7
Samples: 152

Max nTPM: 29.2
Min nTPM: 4.2
Std nTPM: 3.5
Median nTPM: 10.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 29.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 24.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 21.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 20.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 19.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 18.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 17.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 16.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 16.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 16.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 16.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 15.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 15.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 15.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 14.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 14.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 14.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 14.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 13.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 13.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 13.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 13.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 13.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 13.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 13.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 13.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 13.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 13.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 12.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 12.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 12.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 12.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 12.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 12.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 12.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 12.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 12.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 12.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 12.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 12.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 12.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 12.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 12.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 11.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 11.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 11.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 11.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 11.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 11.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 11.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 11.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 11.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 11.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 11.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 11.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 11.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 11.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 11.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 11.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 11.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 10.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 10.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 10.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 10.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 10.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 10.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 10.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 10.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 10.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 10.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 10.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 10.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 10.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 10.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 10.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 10.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 9.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 9.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 9.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 9.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 9.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 9.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 9.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 9.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 9.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 9.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 9.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 9.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 9.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 9.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 9.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 9.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 9.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 9.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 9.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 9.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 9.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 9.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 8.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 8.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 8.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 8.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 8.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 8.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 8.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 8.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 8.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 8.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 8.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 8.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 8.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 8.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 8.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 8.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 8.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 8.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 8.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 8.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 8.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 8.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 8.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 8.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 8.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 7.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 7.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 7.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 7.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 7.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 7.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 7.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 7.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 7.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 7.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 7.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 7.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 7.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 7.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 7.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 7.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 7.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 7.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 7.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 7.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 6.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 6.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 6.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 6.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 5.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 5.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 5.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 4.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 31.0
FF:10151-102I7 76 years, female 31.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.4
Pig sample Sample description nTPM
Amygdala
nTPM: 12.4
Samples: 4

Max nTPM: 14.3
Min nTPM: 11.3
Sample A Female 14.3
Sample B Female 11.3
Sample C Male 11.7
Sample D Male 12.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 42.0
Samples: 4

Max nTPM: 44.8
Min nTPM: 40.5
Sample A Male 40.5
Sample B Male 44.8
Sample C Female 40.9
Sample D Female 41.6

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