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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:89.7 nTPM
HPA Brain:110.2 nTPM
GTEx:89.7 nTPM
FANTOM5:100.4 Scaled Tags Per Million
Pig:114.5 nTPM
Mouse:71.3 nTPM
Allen mouse:6.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.2
Sample id Sample description nTPM
Amygdala
nTPM: 110.2
1987 Female, age 91, left hemisphere 156.3
2517 Female, age 94, left hemisphere 117.9
2695 Female, age 67, right hemisphere 103.9
2514 Male, age 75, right hemisphere 97.3
2814 Male, age 76, right hemisphere 75.8
Basal amygdala
nTPM: 69.8
2609 Male, age 75, right hemisphere 89.1
2110 Male, age 80, left hemisphere 82.9
2243 Female, age 91, right hemisphere 80.0
1955 Male, age 76, both hemispheres 70.8
2685 Female, age 94, left hemisphere 58.3
2827 Female, age 67, right hemisphere 37.9
Central amygdala
nTPM: 82.3
2515 Male, age 75, right hemisphere 107.1
2701 Female, age 91, right hemisphere 83.6
2826 Female, age 94, left hemisphere 77.0
2239 Male, age 80, left hemisphere 72.4
1905 Male, age 76, both hemispheres 71.6
Corticomedial amygdala
nTPM: 72.0
2428 Male, age 75, right hemisphere 93.5
2242 Female, age 91, right hemisphere 92.4
2829 Male, age 80, left hemisphere 81.0
2240 Male, age 76, both hemispheres 66.2
2429 Female, age 94, left hemisphere 57.9
2535 Female, age 67, right hemisphere 41.2
Lateral amygdala
nTPM: 66.3
2255 Female, age 91, right hemisphere 81.8
2256 Male, age 80, left hemisphere 80.0
2516 Male, age 75, right hemisphere 70.2
1883 Male, age 76, both hemispheres 63.6
2534 Female, age 94, left hemisphere 59.6
2830 Female, age 67, right hemisphere 42.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 89.7
Samples: 152

Max nTPM: 338.1
Min nTPM: 13.8
Std nTPM: 43.3
Median nTPM: 80.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 338.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 194.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 183.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 182.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 180.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 177.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 173.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 170.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 164.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 164.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 164.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 154.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 153.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 152.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 151.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 150.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 150.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 144.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 141.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 139.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 136.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 134.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 134.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 133.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 128.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 128.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 125.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 123.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 123.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 122.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 121.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 120.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 119.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 116.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 116.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 114.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 112.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 109.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 107.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 107.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 106.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 106.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 104.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 103.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 102.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 101.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 101.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 101.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 101.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 100.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 97.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 95.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 94.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 94.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 93.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 93.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 91.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 91.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 89.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 88.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 87.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 87.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 86.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 86.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 86.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 85.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 84.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 84.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 84.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 83.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 82.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 82.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 82.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 81.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 81.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 81.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 80.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 78.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 78.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 78.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 77.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 77.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 77.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 76.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 76.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 75.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 75.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 75.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 75.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 74.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 74.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 73.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 73.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 73.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 71.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 71.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 71.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 70.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 70.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 69.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 69.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 69.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 69.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 68.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 68.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 67.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 67.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 67.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 66.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 66.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 66.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 65.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 62.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 61.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 61.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 61.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 61.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 60.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 60.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 59.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 59.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 57.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 56.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 54.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 53.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 53.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 53.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 52.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 52.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 50.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 50.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 49.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 48.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 48.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 48.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 47.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 45.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 43.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 42.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 42.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 41.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 37.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 36.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 33.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 32.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 31.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 30.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 26.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 25.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 24.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 22.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 13.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 100.4
FF:10151-102I7 76 years, female 100.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.5
Pig sample Sample description nTPM
Amygdala
nTPM: 114.5
Samples: 4

Max nTPM: 132.4
Min nTPM: 106.4
Sample A Female 132.4
Sample B Female 106.6
Sample C Male 112.6
Sample D Male 106.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 71.3
Samples: 4

Max nTPM: 79.8
Min nTPM: 66.8
Sample A Male 66.8
Sample B Male 66.9
Sample C Female 79.8
Sample D Female 71.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.4
74581394 Antisense, RP_060117_02_C03, Mouse strain C57BL/6J (56 days, male) 7.9
68269057 Antisense, RP_041208_01_G08, Mouse strain C57BL/6J (56 days, male) 4.8

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