MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.1 nTPM
HPA Brain:72.5 nTPM
GTEx:40.1 nTPM
FANTOM5:146.5 Scaled Tags Per Million
Pig:76.2 nTPM
Mouse:106.9 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 72.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.2
2411 Female, age 72, unknown 79.4
2019 Male, age 18, unknown 73.8
2666 Male, age 74, left hemisphere 69.5
1827 Male, age 72, unknown 68.9
2586 Male, age 75, left hemisphere 68.5
2828 Female, age 72, unknown 67.3
1833 Male, age 53, unknown 65.7
1830 Male, age 51, unknown 65.4
1870 Female, age 42, unknown 65.2
2219 Male, age 76, both hemispheres 58.8
Dorsal raphe nucleus
nTPM: 64.2
2750 Male, age 76, both hemispheres 74.6
2047 Male, age 72, unknown 65.4
2298 Female, age 72, unknown 62.7
1828 Male, age 53, unknown 61.9
2016 Female, age 72, unknown 56.4
Inferior colliculus
nTPM: 54.3
1890 Male, age 53, unknown 55.5
1848 Female, age 42, unknown 54.7
2097 Female, age 72, unknown 54.5
2849 Male, age 72, unknown 52.5
Median raphe nucleus
nTPM: 64.8
2220 Male, age 76, midline 64.8
Periaquaductal grey, anterior
nTPM: 62.2
1947 Male, age 18, unknown 68.4
1795 Male, age 51, unknown 59.9
2502 Female, age 75, unknown 58.4
Periaquaductal grey, dorsal
nTPM: 54.3
2464 Female, age 72, unknown 61.1
1840 Male, age 53, unknown 55.1
1831 Male, age 72, unknown 53.9
2850 Male, age 76, both hemispheres 47.0
Periaquaductal grey, lateral
nTPM: 56.3
2272 Male, age 74, both hemispheres 59.7
2053 Male, age 18, unknown 58.5
2140 Male, age 76, both hemispheres 50.7
Pretectal area
nTPM: 66.5
2007 Male, age 72, unknown 79.2
1815 Male, age 53, unknown 73.0
1817 Female, age 42, unknown 72.3
1816 Male, age 51, unknown 71.6
1944 Female, age 72, unknown 67.6
2316 Male, age 76, right hemisphere 65.7
2407 Male, age 75, both hemispheres 65.5
2667 Female, age 75, unknown 63.8
2825 Male, age 18, unknown 59.1
2224 Female, age 72, unknown 57.2
2273 Male, age 74, both hemispheres 56.1
Red nucleus
nTPM: 69.9
2823 Male, age 76, right hemisphere 78.0
2503 Female, age 72, unknown 73.1
1904 Male, age 53, unknown 72.8
2588 Male, age 74, left hemisphere 72.7
2785 Male, age 18, unknown 72.5
1865 Male, age 51, unknown 72.1
1821 Female, age 72, unknown 71.8
2584 Male, age 75, left hemisphere 70.6
2769 Male, age 72, unknown 66.8
1954 Female, age 42, unknown 65.7
2227 Male, age 72, unknown 64.6
2725 Female, age 75, unknown 58.2
Substantia nigra
nTPM: 72.5
1916 Female, age 42, unknown 81.7
1851 Male, age 51, unknown 79.5
2409 Female, age 72, unknown 77.2
2590 Female, age 75, unknown 74.8
2583 Male, age 75, right hemisphere 73.3
2241 Male, age 72, unknown 72.2
1941 Male, age 53, unknown 71.3
1889 Female, age 72, unknown 68.9
2665 Male, age 74, both hemispheres 63.7
2699 Male, age 18, unknown 62.3
Superior colliculus
nTPM: 65.4
2668 Female, age 75, unknown 82.9
1913 Female, age 42, unknown 70.7
1895 Male, age 76, right hemisphere 66.6
2261 Male, age 18, unknown 65.2
2087 Female, age 72, unknown 65.1
1796 Male, age 53, unknown 62.7
2587 Male, age 74, left hemisphere 61.3
1995 Male, age 72, unknown 61.2
1839 Male, age 51, unknown 59.2
2664 Male, age 75, both hemispheres 59.2
Ventral tegmental area
nTPM: 67.2
2410 Female, age 72, unknown 81.0
1915 Female, age 42, unknown 70.8
2218 Male, age 76, both hemispheres 65.1
1942 Male, age 51, unknown 64.4
2021 Male, age 53, unknown 62.7
2223 Female, age 72, unknown 59.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.1
Samples: 139

Max nTPM: 60.8
Min nTPM: 24.5
Std nTPM: 7.4
Median nTPM: 39.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 60.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 58.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 57.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 57.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 57.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 56.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 53.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 52.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 52.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 51.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 50.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 146.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 146.5
FF:10158-103A5 76 years, female 146.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 76.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.6
Samples: 4

Max nTPM: 90.6
Min nTPM: 60.6
Sample A Female 90.6
Sample B Female 60.6
Sample C Male 74.7
Sample D Male 72.5
Midbrain
nTPM: 76.2
Samples: 4

Max nTPM: 107.6
Min nTPM: 57.1
Sample A Female 107.6
Sample B Female 68.2
Sample C Male 71.7
Sample D Male 57.1
Periaqueductal gray
nTPM: 57.3
Samples: 3

Max nTPM: 60.9
Min nTPM: 52.2
Sample B Female 58.8
Sample C Male 60.9
Sample D Male 52.2
Superior colliculi
nTPM: 67.1
Samples: 4

Max nTPM: 73.2
Min nTPM: 53.5
Sample A Female 73.2
Sample B Female 53.5
Sample C Male 73.0
Sample D Male 68.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 106.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 106.9
Samples: 4

Max nTPM: 110.0
Min nTPM: 102.7
Sample A Male 102.7
Sample B Male 105.3
Sample C Female 109.5
Sample D Female 110.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
68633261 Antisense, RP_050125_02_F01, Mouse strain C57BL/6J (56 days, male) 12.0

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