MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.5 nTPM
HPA Brain:39.7 nTPM
GTEx:16.5 nTPM
FANTOM5:58.0 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:12.6 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.3
2586 Male, age 75, left hemisphere 40.1
1830 Male, age 51, unknown 39.7
1833 Male, age 53, unknown 39.1
1870 Female, age 42, unknown 37.7
2828 Female, age 72, unknown 37.5
1827 Male, age 72, unknown 36.4
2019 Male, age 18, unknown 36.4
2411 Female, age 72, unknown 35.7
2666 Male, age 74, left hemisphere 35.5
2219 Male, age 76, both hemispheres 34.7
Dorsal raphe nucleus
nTPM: 35.3
2750 Male, age 76, both hemispheres 38.4
2016 Female, age 72, unknown 36.5
2047 Male, age 72, unknown 34.7
1828 Male, age 53, unknown 34.5
2298 Female, age 72, unknown 32.1
Inferior colliculus
nTPM: 35.9
2849 Male, age 72, unknown 38.8
1890 Male, age 53, unknown 36.4
1848 Female, age 42, unknown 36.1
2097 Female, age 72, unknown 32.4
Median raphe nucleus
nTPM: 32.7
2220 Male, age 76, midline 32.7
Periaquaductal grey, anterior
nTPM: 36.8
1795 Male, age 51, unknown 37.3
1947 Male, age 18, unknown 36.8
2502 Female, age 75, unknown 36.4
Periaquaductal grey, dorsal
nTPM: 37.4
2850 Male, age 76, both hemispheres 40.5
1831 Male, age 72, unknown 37.3
1840 Male, age 53, unknown 36.2
2464 Female, age 72, unknown 35.5
Periaquaductal grey, lateral
nTPM: 38.7
2140 Male, age 76, both hemispheres 40.5
2272 Male, age 74, both hemispheres 38.8
2053 Male, age 18, unknown 36.6
Pretectal area
nTPM: 36.2
2316 Male, age 76, right hemisphere 41.8
2407 Male, age 75, both hemispheres 37.8
2825 Male, age 18, unknown 37.6
2273 Male, age 74, both hemispheres 37.1
2667 Female, age 75, unknown 37.1
2224 Female, age 72, unknown 35.6
1815 Male, age 53, unknown 35.5
1817 Female, age 42, unknown 35.5
2007 Male, age 72, unknown 34.1
1816 Male, age 51, unknown 33.1
1944 Female, age 72, unknown 33.1
Red nucleus
nTPM: 39.7
2823 Male, age 76, right hemisphere 42.8
1865 Male, age 51, unknown 42.7
2588 Male, age 74, left hemisphere 41.1
2227 Male, age 72, unknown 40.7
1904 Male, age 53, unknown 40.3
2769 Male, age 72, unknown 39.9
1954 Female, age 42, unknown 39.2
2503 Female, age 72, unknown 38.8
2725 Female, age 75, unknown 38.5
2785 Male, age 18, unknown 38.2
2584 Male, age 75, left hemisphere 38.0
1821 Female, age 72, unknown 36.5
Substantia nigra
nTPM: 35.0
2699 Male, age 18, unknown 39.7
2583 Male, age 75, right hemisphere 37.2
2590 Female, age 75, unknown 36.9
2665 Male, age 74, both hemispheres 36.4
1941 Male, age 53, unknown 35.0
2409 Female, age 72, unknown 34.2
1889 Female, age 72, unknown 33.7
1851 Male, age 51, unknown 33.2
1916 Female, age 42, unknown 31.9
2241 Male, age 72, unknown 31.7
Superior colliculus
nTPM: 37.1
1913 Female, age 42, unknown 41.6
1995 Male, age 72, unknown 40.1
1895 Male, age 76, right hemisphere 39.5
1839 Male, age 51, unknown 37.0
1796 Male, age 53, unknown 36.4
2087 Female, age 72, unknown 35.8
2668 Female, age 75, unknown 35.6
2587 Male, age 74, left hemisphere 35.2
2261 Male, age 18, unknown 35.1
2664 Male, age 75, both hemispheres 34.9
Ventral tegmental area
nTPM: 35.1
2218 Male, age 76, both hemispheres 36.7
2223 Female, age 72, unknown 36.4
2021 Male, age 53, unknown 35.3
1942 Male, age 51, unknown 34.8
2410 Female, age 72, unknown 34.3
1915 Female, age 42, unknown 33.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.5
Samples: 139

Max nTPM: 25.3
Min nTPM: 9.8
Std nTPM: 2.9
Median nTPM: 16.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 25.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 24.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 23.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 23.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 22.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 22.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 21.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 21.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 21.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 21.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 20.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.0
FF:10158-103A5 76 years, female 58.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.7
Samples: 4

Max nTPM: 13.9
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 11.3
Sample C Male 9.4
Sample D Male 13.9
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 11.5
Min nTPM: 8.4
Sample A Female 11.5
Sample B Female 8.4
Sample C Male 9.9
Sample D Male 11.5
Periaqueductal gray
nTPM: 9.4
Samples: 3

Max nTPM: 9.7
Min nTPM: 9.0
Sample B Female 9.0
Sample C Male 9.7
Sample D Male 9.5
Superior colliculi
nTPM: 10.1
Samples: 4

Max nTPM: 11.4
Min nTPM: 9.0
Sample A Female 9.0
Sample B Female 10.8
Sample C Male 9.1
Sample D Male 11.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.6
Samples: 4

Max nTPM: 13.3
Min nTPM: 12.1
Sample A Male 12.5
Sample B Male 13.3
Sample C Female 12.1
Sample D Female 12.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
69262318 Antisense, RP_050303_01_H10, Mouse strain C57BL/6J (56 days, male) 4.7

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