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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:102.8 nTPM
HPA Brain:348.4 nTPM
GTEx:102.8 nTPM
FANTOM5:219.1 Scaled Tags Per Million
Pig:456.5 nTPM
Mouse:727.0 nTPM
Allen mouse:31.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

348.4
Sample id Sample description nTPM
Amygdala
nTPM: 251.4
2814 Male, age 76, right hemisphere 373.2
1987 Female, age 91, left hemisphere 314.8
2517 Female, age 94, left hemisphere 312.4
2514 Male, age 75, right hemisphere 159.1
2695 Female, age 67, right hemisphere 97.4
Basal amygdala
nTPM: 348.4
2243 Female, age 91, right hemisphere 489.0
2685 Female, age 94, left hemisphere 454.7
2110 Male, age 80, left hemisphere 383.1
1955 Male, age 76, both hemispheres 310.3
2827 Female, age 67, right hemisphere 242.7
2609 Male, age 75, right hemisphere 210.9
Central amygdala
nTPM: 344.9
2826 Female, age 94, left hemisphere 547.8
1905 Male, age 76, both hemispheres 363.8
2239 Male, age 80, left hemisphere 359.6
2701 Female, age 91, right hemisphere 291.5
2515 Male, age 75, right hemisphere 161.6
Corticomedial amygdala
nTPM: 339.7
2242 Female, age 91, right hemisphere 445.4
2829 Male, age 80, left hemisphere 426.8
2429 Female, age 94, left hemisphere 374.1
2535 Female, age 67, right hemisphere 357.6
2240 Male, age 76, both hemispheres 246.6
2428 Male, age 75, right hemisphere 187.7
Lateral amygdala
nTPM: 321.9
2534 Female, age 94, left hemisphere 652.9
1883 Male, age 76, both hemispheres 380.8
2255 Female, age 91, right hemisphere 297.5
2256 Male, age 80, left hemisphere 275.1
2516 Male, age 75, right hemisphere 172.3
2830 Female, age 67, right hemisphere 152.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 102.8
Samples: 152

Max nTPM: 581.7
Min nTPM: 10.7
Std nTPM: 81.4
Median nTPM: 82.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 581.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 375.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 344.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 266.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 265.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 263.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 258.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 246.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 230.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 224.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 221.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 218.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 214.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 210.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 205.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 204.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 204.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 204.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 202.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 193.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 191.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 191.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 191.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 190.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 186.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 176.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 170.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 168.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 168.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 167.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 166.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 159.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 156.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 144.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 143.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 140.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 139.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 139.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 134.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 133.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 133.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 131.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 129.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 127.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 127.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 126.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 123.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 121.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 120.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 119.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 119.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 115.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 115.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 112.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 110.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 110.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 109.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 109.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 108.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 108.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 108.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 107.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 105.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 102.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 101.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 99.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 97.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 94.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 92.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 87.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 86.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 86.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 85.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 83.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 83.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 83.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 81.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 78.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 75.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 75.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 75.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 75.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 74.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 73.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 72.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 71.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 71.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 69.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 69.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 67.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 67.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 63.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 62.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 60.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 57.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 57.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 57.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 56.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 54.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 53.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 53.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 53.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 51.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 50.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 49.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 49.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 48.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 47.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 46.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 45.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 45.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 44.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 44.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 39.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 39.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 38.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 38.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 37.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 37.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 36.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 35.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 34.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 34.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 32.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 32.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 32.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 32.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 31.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 31.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 30.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 30.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 28.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 28.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 28.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 27.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 26.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 25.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 25.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 25.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 24.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 23.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 23.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 21.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 20.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 20.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 20.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 19.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 18.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 16.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 14.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 11.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 10.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

219.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 219.1
FF:10151-102I7 76 years, female 219.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

456.5
Pig sample Sample description nTPM
Amygdala
nTPM: 456.5
Samples: 4

Max nTPM: 656.7
Min nTPM: 338.1
Sample A Female 656.7
Sample B Female 338.1
Sample C Male 442.7
Sample D Male 388.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

727.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 727.1
Samples: 4

Max nTPM: 804.4
Min nTPM: 672.4
Sample A Male 742.7
Sample B Male 688.7
Sample C Female 804.4
Sample D Female 672.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

31.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 31.3
79544840 Antisense, RP_071101_01_A04, Mouse strain C57BL/6J (56 days, male) 31.3

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