MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.2 nTPM
HPA Brain:76.5 nTPM
GTEx:65.2 nTPM
FANTOM5:27.4 Scaled Tags Per Million
Pig:81.0 nTPM
Mouse:48.5 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.7
2019 Male, age 18, unknown 75.8
2586 Male, age 75, left hemisphere 73.2
2219 Male, age 76, both hemispheres 65.2
2666 Male, age 74, left hemisphere 49.6
2411 Female, age 72, unknown 47.3
2828 Female, age 72, unknown 43.2
1870 Female, age 42, unknown 39.6
1827 Male, age 72, unknown 39.2
1830 Male, age 51, unknown 37.8
1833 Male, age 53, unknown 36.1
Dorsal raphe nucleus
nTPM: 56.6
2298 Female, age 72, unknown 65.8
2047 Male, age 72, unknown 62.6
2750 Male, age 76, both hemispheres 57.5
1828 Male, age 53, unknown 55.2
2016 Female, age 72, unknown 41.8
Inferior colliculus
nTPM: 31.4
1890 Male, age 53, unknown 34.7
2097 Female, age 72, unknown 32.1
2849 Male, age 72, unknown 30.3
1848 Female, age 42, unknown 28.3
Median raphe nucleus
nTPM: 76.5
2220 Male, age 76, midline 76.5
Periaquaductal grey, anterior
nTPM: 42.1
1795 Male, age 51, unknown 55.2
2502 Female, age 75, unknown 43.1
1947 Male, age 18, unknown 27.9
Periaquaductal grey, dorsal
nTPM: 38.3
1831 Male, age 72, unknown 43.0
1840 Male, age 53, unknown 42.4
2464 Female, age 72, unknown 35.6
2850 Male, age 76, both hemispheres 32.3
Periaquaductal grey, lateral
nTPM: 32.0
2272 Male, age 74, both hemispheres 33.6
2140 Male, age 76, both hemispheres 32.5
2053 Male, age 18, unknown 29.9
Pretectal area
nTPM: 48.9
1817 Female, age 42, unknown 78.9
2007 Male, age 72, unknown 69.5
1815 Male, age 53, unknown 57.1
1944 Female, age 72, unknown 52.8
2224 Female, age 72, unknown 50.5
1816 Male, age 51, unknown 48.3
2667 Female, age 75, unknown 40.2
2407 Male, age 75, both hemispheres 39.1
2825 Male, age 18, unknown 38.5
2273 Male, age 74, both hemispheres 32.2
2316 Male, age 76, right hemisphere 30.7
Red nucleus
nTPM: 38.3
2785 Male, age 18, unknown 65.3
2584 Male, age 75, left hemisphere 54.9
2588 Male, age 74, left hemisphere 44.0
2725 Female, age 75, unknown 38.7
1821 Female, age 72, unknown 35.5
2769 Male, age 72, unknown 34.7
2503 Female, age 72, unknown 33.8
2227 Male, age 72, unknown 33.6
1904 Male, age 53, unknown 31.9
1865 Male, age 51, unknown 30.1
1954 Female, age 42, unknown 29.3
2823 Male, age 76, right hemisphere 27.5
Substantia nigra
nTPM: 72.4
2665 Male, age 74, both hemispheres 116.6
1851 Male, age 51, unknown 95.2
1916 Female, age 42, unknown 92.4
2699 Male, age 18, unknown 69.8
1941 Male, age 53, unknown 67.9
2241 Male, age 72, unknown 66.1
2409 Female, age 72, unknown 65.7
1889 Female, age 72, unknown 54.4
2583 Male, age 75, right hemisphere 52.7
2590 Female, age 75, unknown 43.4
Superior colliculus
nTPM: 41.7
2668 Female, age 75, unknown 67.6
2664 Male, age 75, both hemispheres 58.1
2087 Female, age 72, unknown 48.8
1796 Male, age 53, unknown 42.4
2587 Male, age 74, left hemisphere 37.1
1839 Male, age 51, unknown 36.0
1995 Male, age 72, unknown 34.1
1913 Female, age 42, unknown 33.8
1895 Male, age 76, right hemisphere 31.8
2261 Male, age 18, unknown 27.4
Ventral tegmental area
nTPM: 61.6
1915 Female, age 42, unknown 71.7
2410 Female, age 72, unknown 67.5
2021 Male, age 53, unknown 62.7
2218 Male, age 76, both hemispheres 60.9
1942 Male, age 51, unknown 56.4
2223 Female, age 72, unknown 50.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.2
Samples: 139

Max nTPM: 163.4
Min nTPM: 20.0
Std nTPM: 28.2
Median nTPM: 63.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 163.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 163.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 153.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 130.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 126.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 124.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 124.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 121.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 119.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 102.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 102.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.4
FF:10158-103A5 76 years, female 27.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 81.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 75.4
Samples: 4

Max nTPM: 100.2
Min nTPM: 52.1
Sample A Female 100.2
Sample B Female 70.8
Sample C Male 78.3
Sample D Male 52.1
Midbrain
nTPM: 74.0
Samples: 4

Max nTPM: 84.6
Min nTPM: 63.9
Sample A Female 82.1
Sample B Female 63.9
Sample C Male 84.6
Sample D Male 65.3
Periaqueductal gray
nTPM: 59.8
Samples: 3

Max nTPM: 71.3
Min nTPM: 51.1
Sample B Female 57.1
Sample C Male 71.3
Sample D Male 51.1
Superior colliculi
nTPM: 81.0
Samples: 4

Max nTPM: 95.9
Min nTPM: 67.2
Sample A Female 91.8
Sample B Female 69.0
Sample C Male 95.9
Sample D Male 67.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 48.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.5
Samples: 4

Max nTPM: 52.1
Min nTPM: 45.7
Sample A Male 52.1
Sample B Male 45.7
Sample C Female 46.9
Sample D Female 49.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
76081925 Antisense, RP_060626_01_A05, Mouse strain C57BL/6J (56 days, male) 6.8
324211 Antisense, RP_040617_01_E06, Mouse strain C57BL/6J (56 days, male) 6.0
70795448 Antisense, RP_050712_01_F02, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org