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SLC52A3
HPA
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  • SLC52A3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC52A3
Synonyms bA371L19.1, C20orf54, hRFT2, RFVT3
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 52 member 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Metabolic proteins
Plasma proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 20
Cytoband p13
Chromosome location (bp) 760080 - 776015
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000101276 (version 109)
Entrez gene 113278
HGNC HGNC:16187
UniProt Q9NQ40 (UniProt - Evidence at protein level)
neXtProt NX_Q9NQ40
GeneCards SLC52A3
Antibodypedia SLC52A3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Plasma membrane transporter mediating the uptake by cells of the water soluble vitamin B2/riboflavin that plays a key role in biochemical oxidation-reduction reactions of the carbohydrate, lipid, and amino acid metabolism 1, 2, 3, 4. Humans are unable to synthesize vitamin B2/riboflavin and must obtain it via intestinal absorption 5.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a riboflavin transporter protein that is strongly expressed in the intestine and likely plays a role in intestinal absorption of riboflavin. The protein is predicted to have eleven transmembrane domains and a cell surface localization signal in the C-terminus. Mutations at this locus have been associated with Brown-Vialetto-Van Laere syndrome and Fazio-Londe disease. [provided by RefSeq, Mar 2012]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC52A3-201
ENSP00000217254
ENST00000217254
Q9NQ40
[Direct mapping] Solute carrier family 52, riboflavin transporter, member 3
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006771 [riboflavin metabolic process]
GO:0007605 [sensory perception of sound]
GO:0016020 [membrane]
GO:0016324 [apical plasma membrane]
GO:0031965 [nuclear membrane]
GO:0032217 [riboflavin transmembrane transporter activity]
GO:0032218 [riboflavin transport]
Show all
469 aa
50.8 kDa
No >9
SLC52A3-202
ENSP00000371370
ENST00000381944
Q9NQ40
[Direct mapping] Solute carrier family 52, riboflavin transporter, member 3
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006771 [riboflavin metabolic process]
GO:0007605 [sensory perception of sound]
GO:0016020 [membrane]
GO:0016324 [apical plasma membrane]
GO:0031965 [nuclear membrane]
GO:0032217 [riboflavin transmembrane transporter activity]
GO:0032218 [riboflavin transport]
Show all
415 aa
45 kDa
No 8
SLC52A3-203
ENSP00000502741
ENST00000473664
A0A6Q8PHL7
[Direct mapping] Solute carrier family 52, riboflavin transporter, member 3
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0016020 [membrane]
GO:0032217 [riboflavin transmembrane transporter activity]
GO:0032218 [riboflavin transport]
Show all
336 aa
35.6 kDa
No 4
SLC52A3-204
ENSP00000494009
ENST00000488495
Q9NQ40
[Direct mapping] Solute carrier family 52, riboflavin transporter, member 3
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006771 [riboflavin metabolic process]
GO:0007605 [sensory perception of sound]
GO:0016020 [membrane]
GO:0016324 [apical plasma membrane]
GO:0031965 [nuclear membrane]
GO:0032217 [riboflavin transmembrane transporter activity]
GO:0032218 [riboflavin transport]
Show all
469 aa
50.8 kDa
No >9
SLC52A3-205
ENSP00000494193
ENST00000645534
Q9NQ40
[Direct mapping] Solute carrier family 52, riboflavin transporter, member 3
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006771 [riboflavin metabolic process]
GO:0007605 [sensory perception of sound]
GO:0016020 [membrane]
GO:0016324 [apical plasma membrane]
GO:0031965 [nuclear membrane]
GO:0032217 [riboflavin transmembrane transporter activity]
GO:0032218 [riboflavin transport]
GO:0034605 [cellular response to heat]
Show all
469 aa
50.8 kDa
No >9
SLC52A3-206
ENSP00000502783
ENST00000674666
A0A6Q8PHL2
[Direct mapping] Solute carrier family 52, riboflavin transporter, member 3
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0016020 [membrane]
GO:0032217 [riboflavin transmembrane transporter activity]
GO:0032218 [riboflavin transport]
Show all
44 aa
5.1 kDa
No 1
SLC52A3-207
ENSP00000501902
ENST00000675066
A0A6Q8PFQ2
[Direct mapping] Riboflavin transporter
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   GPCRHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0016020 [membrane]
GO:0032217 [riboflavin transmembrane transporter activity]
GO:0032218 [riboflavin transport]
Show all
364 aa
39.7 kDa
No 7
SLC52A3-209
ENSP00000501807
ENST00000676154
A0A6Q8PFG7
[Direct mapping] Solute carrier family 52, riboflavin transporter, member 3
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0016020 [membrane]
GO:0032217 [riboflavin transmembrane transporter activity]
GO:0032218 [riboflavin transport]
Show all
228 aa
24.9 kDa
No 4

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